From 4a3aef3f7236d2b3267aead61f11c587c6f4bddb Mon Sep 17 00:00:00 2001
From: Joseph Hunkeler <jhunkeler@gmail.com>
Date: Thu, 5 Mar 2015 18:05:27 -0500
Subject: Further improvements

---
 bin/calfuse.sh | 142 ---------------------------------------------------------
 1 file changed, 142 deletions(-)
 delete mode 100755 bin/calfuse.sh

(limited to 'bin/calfuse.sh')

diff --git a/bin/calfuse.sh b/bin/calfuse.sh
deleted file mode 100755
index 0cd23a9..0000000
--- a/bin/calfuse.sh
+++ /dev/null
@@ -1,142 +0,0 @@
-#!/bin/sh
-#******************************************************************************
-#*              Johns Hopkins University 
-#*              Center For Astrophysical Sciences
-#*              FUSE
-#******************************************************************************
-#*
-#* Synopsis:    calfuse.sh file_name 
-#*
-#* Description: Shell script for processing FUSE Ver 3.2 time-tagged exposures.
-#*		All messages are written to stdout or stderr.
-#*
-#* Arguments:   char    file_name	File name to process is 1st command-
-#*                                      line argument
-#*
-#* Returns:     Exit codes:
-#*			0		Successful execution
-#*			
-#*
-#* Environment variables:  CF_CALDIR    Path to directory which contains the
-#*                                      calibration files.
-#*                         CF_IDLDIR    Path to CalFUSE IDL directory
-#*                         CF_PIPELINE  Flag to determine if CALFUSE
-#*                                      is running as part of the JHU 
-#*                                      pipeline.
-#*
-#* History:     09/05/07   1.1   bot    Adapted from tcsh script
-#*
-#*****************************************************************************/
-
-# Delete files after processing?  (Default is no.)
-#DELETE_IDF=1	  		# Delete intermediate data file
-#DELETE_BPM=1			# Delete bad-pixel map
-
-idf=`echo $1 | sed -e "s/raw/idf/g"`
-froot=`echo $1 | sed -e "s/raw.fit//g"`
-logfile=${froot}.trl
-ttag=`echo $froot | grep -c ttag`
-
-
-# Put a timestamp in the log file (the OPUS trailer file).
-if [ $ttag = 1 ]; then
-    echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin TTAG file $1"
-    echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin TTAG file $1" >> $logfile 2>&1
-else
-    echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin HIST file $1"
-    echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin HIST file $1" >> $logfile 2>&1
-fi
-
-cfstat=1
-
-# Step 1  --  Generate Intermediate Data File
-if [ $ttag = 1 ]; then
-    cf_ttag_init        $1    $idf    >> $logfile 2>&1
-    cfstat=$?
-else
-    cf_hist_init        $1    $idf    >> $logfile 2>&1
-    cfstat=$?
-fi
-
-# Step 2  --  Convert to FARF
-if [ $cfstat = 0 ]; then
-    cf_convert_to_farf        $idf    >> $logfile 2>&1
-    cfstat=$?
-fi
-
-# Step 3  --  Screen photons
-if [ $cfstat = 0 ]; then
-    cf_screen_photons         $idf    >> $logfile 2>&1
-    cfstat=$?
-fi
-
-# Step 4  --  Remove motions
-if [ $cfstat = 0 ]; then
-    cf_remove_motions         $idf    >> $logfile 2>&1
-    cfstat=$?
-fi
-
-if [ $cfstat = 0 ]; then
-	if [ ${CF_IDLDIR:-""} != "" ]; then
-	    idlplot_rate.pl   $froot  >> $logfile 2>&1
-            idlplot_spex.pl   $froot  >> $logfile 2>&1
-	fi
-fi
-
-# Step 5  --  Assign wavelength
-if [ $cfstat = 0 ]; then
-    cf_assign_wavelength      $idf    >> $logfile 2>&1
-    cfstat=$?
-fi
-
-# Step 6  --  Flux calibrate
-if [ $cfstat = 0 ]; then
-    cf_flux_calibrate         $idf    >> $logfile 2>&1
-    cfstat=$?
-fi
-
-# Step 7 -- Create a bad-pixel file
-if [ $cfstat = 0 ]; then
-    cf_bad_pixels             $idf    >> $logfile 2>&1
-    cfstat=$?
-fi
-
-# Step 8  --  Extract spectra
-if [ $cfstat = 0 ]; then
-    cf_extract_spectra        $idf    >> $logfile 2>&1
-    cfstat=$? 
-fi
-
-# Step 8a --  Delete _bursts.dat file
-if [ ${CF_PIPELINE:-""} = "" ]; then
-    rm -f `echo $1 | sed -e "s/ttagfraw.fit/_bursts.dat/g"`
-fi
-
-# Step 8b --  Delete IDF file
-if [ ${DELETE_IDF:-""} != "" ]; then
-    echo "NOTE: Deleting intermediate data file."
-    rm -f $idf
-fi
-
-# Step 8c --  Delete bad pixel map (bpm) file
-if [ ${DELETE_BPM:-""} != "" ]; then
-    echo "NOTE: Deleting bad pixel map (bpm) file."
-    rm -f `echo $1 | sed -e "s/raw/bpm/g"`
-fi
-
-if [ $cfstat = 0 ]; then
- if [ $ttag = 1 ]; then
-  echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End   TTAG file $1"
-  echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End   TTAG file $1"  >> $logfile 2>&1
- else
-  echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End   HIST file $1"
-  echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End   HIST file $1"  >> $logfile 2>&1
- fi
-else
-  echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Error processing $1"
-  echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Error processing $1" >> $logfile 2>&1
-fi
-
-exit $cfstat
-
-#******************************************************************************
-- 
cgit