Acs darktime (#118)

* hcaldp darktime_acs delivery rc1

8 files changed, 295 insertions, 0 deletions

diff --git a/caldp/darktime/README.md b/caldp/darktime/README.md
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+NOTE: This release continues in using some recently introduced minor changes in installation
+procedures. Please see below for details.
+
+# Installing
+
+Currently, conda is required to manage installation of the enviornment. A fresh
+installation of Anaconda3 or Miniconda3 is not required for each HCALDP release,
+however.  An existing conda installation may be used. The method described here
+allows for multiple, entirely segregated, pipeline installations.
+
+A `bash`-compatible shell is required for all steps below.
+
+Python dependencies are now taken directly from PyPI or development repositories as
+needed, so conda's ability to install hybrid conda/pip environments from a YAML
+specification is used. This requires first downloading the specification file
+and then creating the environment with it.
+
+## For existing conda installations:
+
+### Install the pipeline environment
+
+```
+$ curl -O https://ssb.stsci.edu/releases/caldp/darktime/latest-linux.yml
+$ conda env create -n caldp_darktime --file latest-linux.yml
+```
+
+
+### Activate the pipeline environment
+
+```
+$ source activate caldp_darktime
+```
+
+Each new delivery iteration of the calibration environment will need to be
+installed using the above commands.
+
+------
+
+## If conda is not yet installed
+
+If the conda tool is not available on the target system, it will need to be
+installed before the calibration environment can be installed.
+
+### Installing conda
+
+For detailed instructions of this step, please visit: http://docs.continuum.io/anaconda/install#linux-install
+
+**Miniconda:**
+
+```
+$ wget https://repo.anaconda.com/miniconda/Miniconda3-py37_4.8.2-Linux-x86_64.sh
+$ bash Miniconda3-py37_4.8.2-Linux-x86_64.sh
+$ export PATH=$HOME/miniconda3/bin:$PATH
+```
+
+**Anaconda (if preferred):**
+
+```
+$ wget https://repo.continuum.io/archive/Anaconda3-2019.10-Linux-x86_64.sh
+$ bash Anaconda3-2019.10-Linux-x86_64.sh
+$ export PATH=$HOME/anaconda3/bin:$PATH
+```
+
diff --git a/caldp/darktime/dev/CALDP_darktime_ACS_linux_py36_rc1.yml b/caldp/darktime/dev/CALDP_darktime_ACS_linux_py36_rc1.yml
new file mode 100644
index 0000000..91a3247
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+++ b/caldp/darktime/dev/CALDP_darktime_ACS_linux_py36_rc1.yml
@@ -0,0 +1,108 @@
+channels:
+- https://ssb.stsci.edu/astroconda-staging
+- https://ssb.stsci.edu/astroconda
+- defaults
+dependencies:
+- _libgcc_mutex=0.1=main
+- bzip2=1.0.8=h7b6447c_0
+- ca-certificates=2020.1.1=0
+- certifi=2020.4.5.1=py36_0
+- cfitsio=3.470=1
+- fitsverify=4.18=13
+- hstcal=2.3.2rc1.dev0+ga822901=5
+- ld_impl_linux-64=2.33.1=h53a641e_7
+- libedit=3.1.20181209=hc058e9b_0
+- libffi=3.2.1=hd88cf55_4
+- libgcc=7.2.0=h69d50b8_2
+- libgcc-ng=9.1.0=hdf63c60_0
+- libgfortran-ng=7.3.0=hdf63c60_0
+- libstdcxx-ng=9.1.0=hdf63c60_0
+- ncurses=6.2=he6710b0_0
+- openssl=1.1.1f=h7b6447c_0
+- pip=20.0.2=py36_1
+- python=3.6.10=hcf32534_1
+- readline=8.0=h7b6447c_0
+- setuptools=46.1.3=py36_0
+- sqlite=3.31.1=h7b6447c_0
+- tk=8.6.8=hbc83047_0
+- wheel=0.34.2=py36_0
+- xz=5.2.4=h14c3975_4
+- zlib=1.2.11=h7b6447c_3
+- pip:
+  - acstools==3.1.0
+  - alabaster==0.7.12
+  - astropy==4.0.1.post1
+  - astroquery==0.4
+  - babel==2.8.0
+  - beautifulsoup4==4.9.0
+  - calcos==3.3.9
+  - cffi==1.14.0
+  - chardet==3.0.4
+  - costools==1.2.3
+  - crds==7.4.1.3
+  - cryptography==2.9
+  - cycler==0.10.0
+  - decorator==4.4.2
+  - docutils==0.16
+  - drizzlepac==3.1.6
+  - filelock==3.0.12
+  - fitsblender==0.3.6
+  - html5lib==1.0.1
+  - idna==2.9
+  - imageio==2.8.0
+  - imagesize==1.2.0
+  - importlib-metadata==1.6.0
+  - jeepney==0.4.3
+  - jinja2==2.11.1
+  - keyring==21.2.0
+  - kiwisolver==1.2.0
+  - lxml==4.5.0
+  - markupsafe==1.1.1
+  - matplotlib==3.2.1
+  - networkx==2.4
+  - nictools==1.1.5
+  - nose==1.3.7
+  - numpy==1.18.2
+  - numpydoc==0.9.2
+  - packaging==20.3
+  - parsley==1.3
+  - photutils==0.7.2
+  - pillow==7.1.1
+  - pycparser==2.20
+  - pygments==2.6.1
+  - pyparsing==2.4.7
+  - pysynphot==0.9.14
+  - python-dateutil==2.8.1
+  - pytz==2019.3
+  - pywavelets==1.1.1
+  - requests==2.23.0
+  - scikit-image==0.16.2
+  - scipy==1.4.1
+  - secretstorage==3.1.2
+  - six==1.14.0
+  - snowballstemmer==2.0.0
+  - soupsieve==2.0
+  - spherical-geometry==1.2.18
+  - sphinx==3.0.0
+  - sphinx-rtd-theme==0.4.3
+  - sphinxcontrib-applehelp==1.0.2
+  - sphinxcontrib-devhelp==1.0.2
+  - sphinxcontrib-htmlhelp==1.0.3
+  - sphinxcontrib-jsmath==1.0.1
+  - sphinxcontrib-qthelp==1.0.3
+  - sphinxcontrib-serializinghtml==1.1.4
+  - stistools==1.3.0
+  - stregion==1.1.6
+  - stsci-image==2.3.3
+  - stsci-imagestats==1.6.2
+  - stsci-rtd-theme==0.0.2
+  - stsci-skypac==1.0.4
+  - stsci-stimage==0.2.4
+  - stsci-tools==3.6.0
+  - stwcs==1.5.3
+  - tweakwcs==0.6.1
+  - urllib3==1.25.8
+  - webencodings==0.5.1
+  - wfc3tools==1.3.5
+  - wfpc2tools==1.0.5
+  - zipp==3.1.0
diff --git a/caldp/darktime/dev/CALDP_darktime_ACS_macos_py36_rc1.yml b/caldp/darktime/dev/CALDP_darktime_ACS_macos_py36_rc1.yml
new file mode 100644
index 0000000..d5ab132
--- /dev/null
+++ b/caldp/darktime/dev/CALDP_darktime_ACS_macos_py36_rc1.yml
@@ -0,0 +1,101 @@
+channels:
+- https://ssb.stsci.edu/astroconda-staging
+- https://ssb.stsci.edu/astroconda
+- defaults
+dependencies:
+- bzip2=1.0.8=h1de35cc_0
+- ca-certificates=2020.1.1=0
+- certifi=2020.4.5.1=py36_0
+- cfitsio=3.470=1
+- fitsverify=4.18=13
+- hstcal=2.3.2rc1.dev0+ga822901f=5
+- libcxx=4.0.1=hcfea43d_1
+- libcxxabi=4.0.1=hcfea43d_1
+- libedit=3.1.20181209=hb402a30_0
+- libffi=3.2.1=h475c297_4
+- libgcc=4.8.5=hdbeacc1_10
+- libgfortran=3.0.1=h93005f0_2
+- ncurses=6.2=h0a44026_0
+- openssl=1.1.1f=h1de35cc_0
+- pip=20.0.2=py36_1
+- python=3.6.10=hc70fcce_1
+- readline=8.0=h1de35cc_0
+- setuptools=46.1.3=py36_0
+- sqlite=3.31.1=ha441bb4_0
+- tk=8.6.8=ha441bb4_0
+- wheel=0.34.2=py36_0
+- xz=5.2.4=h1de35cc_4
+- zlib=1.2.11=h1de35cc_3
+- pip:
+  - acstools==3.1.0
+  - alabaster==0.7.12
+  - astropy==4.0.1.post1
+  - astroquery==0.4
+  - babel==2.8.0
+  - beautifulsoup4==4.9.0
+  - calcos==3.3.9
+  - chardet==3.0.4
+  - costools==1.2.3
+  - crds==7.4.1.3
+  - cycler==0.10.0
+  - decorator==4.4.2
+  - docutils==0.16
+  - drizzlepac==3.1.6
+  - filelock==3.0.12
+  - fitsblender==0.3.6
+  - html5lib==1.0.1
+  - idna==2.9
+  - imageio==2.8.0
+  - imagesize==1.2.0
+  - importlib-metadata==1.6.0
+  - jinja2==2.11.1
+  - keyring==21.2.0
+  - kiwisolver==1.2.0
+  - lxml==4.5.0
+  - markupsafe==1.1.1
+  - matplotlib==3.2.1
+  - networkx==2.4
+  - nictools==1.1.5
+  - nose==1.3.7
+  - numpy==1.18.2
+  - numpydoc==0.9.2
+  - packaging==20.3
+  - parsley==1.3
+  - photutils==0.7.2
+  - pillow==7.1.1
+  - pygments==2.6.1
+  - pyparsing==2.4.7
+  - pysynphot==0.9.14
+  - python-dateutil==2.8.1
+  - pytz==2019.3
+  - pywavelets==1.1.1
+  - requests==2.23.0
+  - scikit-image==0.16.2
+  - scipy==1.4.1
+  - six==1.14.0
+  - snowballstemmer==2.0.0
+  - soupsieve==2.0
+  - spherical-geometry==1.2.18
+  - sphinx==3.0.0
+  - sphinx-rtd-theme==0.4.3
+  - sphinxcontrib-applehelp==1.0.2
+  - sphinxcontrib-devhelp==1.0.2
+  - sphinxcontrib-htmlhelp==1.0.3
+  - sphinxcontrib-jsmath==1.0.1
+  - sphinxcontrib-qthelp==1.0.3
+  - sphinxcontrib-serializinghtml==1.1.4
+  - stistools==1.3.0
+  - stregion==1.1.6
+  - stsci-image==2.3.3
+  - stsci-imagestats==1.6.2
+  - stsci-rtd-theme==0.0.2
+  - stsci-skypac==1.0.4
+  - stsci-stimage==0.2.4
+  - stsci-tools==3.6.0
+  - stwcs==1.5.3
+  - tweakwcs==0.6.1
+  - urllib3==1.25.8
+  - webencodings==0.5.1
+  - wfc3tools==1.3.5
+  - wfpc2tools==1.0.5
+  - zipp==3.1.0
diff --git a/caldp/darktime/latest-linux.yml b/caldp/darktime/latest-linux.yml
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+dev/CALDP_darktime_ACS_linux_py36_rc1.yml
\ No newline at end of file
diff --git a/caldp/darktime/latest-macos.yml b/caldp/darktime/latest-macos.yml
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+dev/CALDP_darktime_ACS_macos_py36_rc1.yml
\ No newline at end of file
diff --git a/caldp/darktime/latest-osx.yml b/caldp/darktime/latest-osx.yml
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+++ b/caldp/darktime/latest-osx.yml
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+dev/CALDP_darktime_ACS_macos_py36_rc1.yml
\ No newline at end of file
diff --git a/caldp/darktime/release_notes.md b/caldp/darktime/release_notes.md
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+# Release Notes
+
+* 2020/04/06 - Initial iteration
diff --git a/caldp/darktime/software_updates.md b/caldp/darktime/software_updates.md
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+# HSTCAL Version 2.3.2
+
+The following updates, specified in separate sections for each instrument,  have been included with this release. This release is presented as [HSTDP-2020.6.2 milestones].
+
+## HSTCAL package updates
+
+## ACS
+ 
+- CALACS updated to Version 10.2.2
+
+- In the DARKCORR step of CALACS, the value of the DARKTIME keyword is used to account for time that dark current accumulates. It has been determined that depending upon the type of WFC observation (i.e., full frame or subarray, post-flash or no post-flash) there is an additional correction needed. The additional correction values need to be read from updated CCDTAB reference files, and correspondingly, the DARKCORR algorithm has been updated to accommodate new logic for applying the correction.
+Issue #326/PR #467.
+
+
+- [x] Affects old data
+- [x] Users should re-retrieve affected datasets from the archive
+- [x] Updated reference files delivered by science team