Merge pull request #2 from astroconda/hstdp-2019.5HEADmaster

Add hstdp-2019.5

10 files changed, 169 insertions, 0 deletions

diff --git a/etc/hstdp-2019.5/pip/001-setuptools b/etc/hstdp-2019.5/pip/001-setuptools
new file mode 100644
index 0000000..e69de29
--- /dev/null
+++ b/etc/hstdp-2019.5/pip/001-setuptools
diff --git a/etc/hstdp-2019.5/pip/002-testing b/etc/hstdp-2019.5/pip/002-testing
new file mode 100644
index 0000000..dee8334
--- /dev/null
+++ b/etc/hstdp-2019.5/pip/002-testing
@@ -0,0 +1,3 @@
+nose==1.3.7
+pytest==4.5.0
+pytest-xdist==1.24.1
diff --git a/etc/hstdp-2019.5/pip/003-prerequisites b/etc/hstdp-2019.5/pip/003-prerequisites
new file mode 100644
index 0000000..69a8d2e
--- /dev/null
+++ b/etc/hstdp-2019.5/pip/003-prerequisites
@@ -0,0 +1,4 @@
+numpy==1.16.4
+scipy==1.2.1
+astropy==3.2.1
+matplotlib==3.1.0
diff --git a/etc/hstdp-2019.5/pip/004-pipeline b/etc/hstdp-2019.5/pip/004-pipeline
new file mode 100644
index 0000000..b82334c
--- /dev/null
+++ b/etc/hstdp-2019.5/pip/004-pipeline
@@ -0,0 +1,26 @@
+parsley==1.3
+d2to1==0.2.12
+stsci.convolve==2.2.2
+stsci.imagestats==1.6.2
+stsci.stimage==0.2.2
+crds==7.3.3
+pysynphot==0.9.12
+reftools==1.7.5 # packaging fixes, 2019.5 wants 1.7.3
+spherical-geometry==1.2.18
+stregion==1.1.4
+stsci.ndimage==0.10.3 # packaging fixes, 2019.5 wants 0.10.1
+stsci.tools==3.6.0
+acstools==3.0.0
+calcos==3.3.7
+fitsblender==0.3.6 # packaging fixes, 2019.5 wants 0.3.5
+nictools==1.1.5 # packaging fixes, 2019.5 wants 1.1.4
+stistools==1.3.0
+stsci.image==2.3.0
+stsci.imagemanip==1.1.4
+stwcs==1.5.1
+wfc3tools==1.3.5
+wfpc2tools==1.0.5
+costools==1.2.3
+stsci.skypac==1.0.4
+gwcs==0.10.0
+drizzlepac==3.1.3
diff --git a/etc/hstdp-2019.5/pkgs/000-dummy.sh b/etc/hstdp-2019.5/pkgs/000-dummy.sh
new file mode 100644
index 0000000..06bd986
--- /dev/null
+++ b/etc/hstdp-2019.5/pkgs/000-dummy.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+exit 0
diff --git a/etc/hstdp-2019.5/pkgs/001-cfitsio.sh b/etc/hstdp-2019.5/pkgs/001-cfitsio.sh
new file mode 100644
index 0000000..719b542
--- /dev/null
+++ b/etc/hstdp-2019.5/pkgs/001-cfitsio.sh
@@ -0,0 +1,15 @@
+#!/bin/bash -e
+
+name=cfitsio
+version=3440
+url=https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/${name}${version}.tar.gz
+
+sudo yum install -y libcurl-devel
+curl -LO "${url}"
+tar xf "$(basename ${url})"
+
+pushd "${name}" &>/dev/null
+./configure --prefix="${PREFIX}" --enable-reentrant
+make shared
+make install
+popd &>/dev/null
diff --git a/etc/hstdp-2019.5/pkgs/002-hstcal.sh b/etc/hstdp-2019.5/pkgs/002-hstcal.sh
new file mode 100644
index 0000000..f7ef911
--- /dev/null
+++ b/etc/hstdp-2019.5/pkgs/002-hstcal.sh
@@ -0,0 +1,18 @@
+#!/bin/bash -e
+name=hstcal
+version=2.3.1
+url="https://github.com/spacetelescope/${name}"
+
+# Grab a version of WAF that isn't broken
+curl -o waf https://waf.io/waf-2.0.12
+chmod +x waf
+
+git clone "${url}"
+pushd "${name}" &>/dev/null
+    git checkout "${version}"
+
+    # Build / Install
+    ../waf configure --prefix=${PREFIX} --release-with-symbols --with-cfitsio=${PREFIX}
+    ../waf build
+    ../waf install
+popd &>/dev/null
diff --git a/etc/hstdp-2019.5/tasks/001-packages.sh b/etc/hstdp-2019.5/tasks/001-packages.sh
new file mode 100755
index 0000000..e948120
--- /dev/null
+++ b/etc/hstdp-2019.5/tasks/001-packages.sh
@@ -0,0 +1,43 @@
+#!/bin/bash
+set -e
+set -x
+
+prefix="${TOOLCHAIN}"
+sysconfdir="${TOOLCHAIN_BUILD}/etc/${PIPELINE}"
+reqdir=${sysconfdir}/pkgs
+blddir=builds
+
+export PATH="${prefix}/bin:${PATH}"
+export CFLAGS="-I${prefix}/include"
+export LDFLAGS="-L${prefix}/lib -Wl,-rpath=${prefix}/lib"
+export PREFIX="${prefix}"
+
+function pre()
+{
+    if [[ ! -d ${reqdir} ]]; then
+        # Nothing there, but maybe that's on purpose.
+        exit 0
+    fi
+    mkdir -p "${blddir}"
+    pushd ${blddir} &>/dev/null
+}
+
+function build()
+{
+    pre
+    # Iterate over binary package build scripts
+    for req in ${reqdir}/*
+    do
+        chmod +x "${req}"
+        "${req}"
+    done
+    post
+}
+
+function post()
+{
+    popd &>/dev/null
+    [[ -d ${blddir} ]] && rm -rf "${blddir}"
+}
+
+build
diff --git a/etc/hstdp-2019.5/tasks/002-python-packages.sh b/etc/hstdp-2019.5/tasks/002-python-packages.sh
new file mode 100755
index 0000000..33714aa
--- /dev/null
+++ b/etc/hstdp-2019.5/tasks/002-python-packages.sh
@@ -0,0 +1,40 @@
+#!/bin/bash
+set -e
+set -x
+
+# Uses GLOBAL environment variable: PYTHON_VERSION defined by `docker build` argument
+prefix="${TOOLCHAIN}"
+sysconfdir="${TOOLCHAIN_BUILD}/etc/${PIPELINE}"
+reqdir=${sysconfdir}/pip
+
+export PATH="${prefix}/bin:${PATH}"
+export CFLAGS="-I${prefix}/include"
+export LDFLAGS="-L${prefix}/lib -Wl,-rpath=${prefix}/lib"
+
+function pre()
+{
+    if [[ ! -d ${reqdir} ]]; then
+        # Nothing there, but maybe that's on purpose.
+        exit 0
+    fi
+}
+
+function build()
+{
+    pre
+    # Iterate over pip requirement files
+    for req in ${reqdir}/*
+    do
+        pip install --upgrade --progress-bar=off -r "${req}"
+    done
+    post
+}
+
+function post()
+{
+    rm -rf ~/.cache/pip
+    [[ -d src ]] && rm -rf src || true
+    [[ -f gmon.out ]] && rm -rf gmon.out || true
+}
+
+build
diff --git a/etc/hstdp-2019.5/tasks/999-clean.sh b/etc/hstdp-2019.5/tasks/999-clean.sh
new file mode 100755
index 0000000..7487b9c
--- /dev/null
+++ b/etc/hstdp-2019.5/tasks/999-clean.sh
@@ -0,0 +1,18 @@
+#!/bin/bash -x
+if [[ ! -f /.dockerenv ]]; then
+    echo "This script cannot be executed outside of a docker container."
+    exit 1
+fi
+
+rm -rf "${HOME}/.astropy"
+rm -rf "${HOME}/.cache"
+rm -rf "${HOME}"/*
+
+sudo yum clean all
+sudo rm -rf /tmp/*
+sudo rm -rf /var/cache/yum
+
+for logfile in /var/log/*
+do
+    sudo truncate --size=0 "${logfile}"
+done