From 2119eeef5d80ae1c14fdd1c45a9d81908ce14e3d Mon Sep 17 00:00:00 2001
From: Joseph Hunkeler <jhunkeler@gmail.com>
Date: Tue, 4 Dec 2018 16:22:46 -0500
Subject: Initial commit

---
 etc/hstdp-2018.3a/pip/001-setuptools           |  0
 etc/hstdp-2018.3a/pip/002-testing              |  5 +++
 etc/hstdp-2018.3a/pip/003-prerequisites        |  3 ++
 etc/hstdp-2018.3a/pip/004-pipeline             | 26 ++++++++++++++++
 etc/hstdp-2018.3a/pkgs/000-dummy.sh            |  2 ++
 etc/hstdp-2018.3a/pkgs/001-cfitsio.sh          | 15 +++++++++
 etc/hstdp-2018.3a/pkgs/002-hstcal.sh           | 16 ++++++++++
 etc/hstdp-2018.3a/tasks/001-python-packages.sh | 40 ++++++++++++++++++++++++
 etc/hstdp-2018.3a/tasks/002-packages.sh        | 43 ++++++++++++++++++++++++++
 etc/hstdp-2018.3a/tasks/999-clean.sh           | 18 +++++++++++
 10 files changed, 168 insertions(+)
 create mode 100644 etc/hstdp-2018.3a/pip/001-setuptools
 create mode 100644 etc/hstdp-2018.3a/pip/002-testing
 create mode 100644 etc/hstdp-2018.3a/pip/003-prerequisites
 create mode 100644 etc/hstdp-2018.3a/pip/004-pipeline
 create mode 100644 etc/hstdp-2018.3a/pkgs/000-dummy.sh
 create mode 100644 etc/hstdp-2018.3a/pkgs/001-cfitsio.sh
 create mode 100644 etc/hstdp-2018.3a/pkgs/002-hstcal.sh
 create mode 100755 etc/hstdp-2018.3a/tasks/001-python-packages.sh
 create mode 100755 etc/hstdp-2018.3a/tasks/002-packages.sh
 create mode 100755 etc/hstdp-2018.3a/tasks/999-clean.sh

(limited to 'etc/hstdp-2018.3a')

diff --git a/etc/hstdp-2018.3a/pip/001-setuptools b/etc/hstdp-2018.3a/pip/001-setuptools
new file mode 100644
index 0000000..e69de29
diff --git a/etc/hstdp-2018.3a/pip/002-testing b/etc/hstdp-2018.3a/pip/002-testing
new file mode 100644
index 0000000..c4b2c9d
--- /dev/null
+++ b/etc/hstdp-2018.3a/pip/002-testing
@@ -0,0 +1,5 @@
+nose==1.3.7
+pytest==4.0.0
+pytest-xdist==1.24.1
+pytest-astropy==0.5.0
+pytest-virtualenv==1.3.0
diff --git a/etc/hstdp-2018.3a/pip/003-prerequisites b/etc/hstdp-2018.3a/pip/003-prerequisites
new file mode 100644
index 0000000..fcc1c48
--- /dev/null
+++ b/etc/hstdp-2018.3a/pip/003-prerequisites
@@ -0,0 +1,3 @@
+numpy==1.15.2
+astropy==3.0.4
+relic==1.1.2
diff --git a/etc/hstdp-2018.3a/pip/004-pipeline b/etc/hstdp-2018.3a/pip/004-pipeline
new file mode 100644
index 0000000..bd8265b
--- /dev/null
+++ b/etc/hstdp-2018.3a/pip/004-pipeline
@@ -0,0 +1,26 @@
+parsley==1.3
+d2to1==0.2.12
+stsci.convolve==2.2.2
+stsci.imagestats==1.5.3
+stsci.stimage==0.2.2
+crds==7.2.6
+pysynphot==0.9.12
+git+https://github.com/spacetelescope/reftools.git@1.7.4#egg=reftools
+spherical-geometry==1.2.4
+stregion==1.1.4
+stsci.ndimage==0.10.3
+stsci.sphere==0.2
+stsci.tools==3.4.13
+git+https://github.com/spacetelescope/acstools.git@2.0.10#egg=acstools
+calcos==3.3.4
+fitsblender==0.3.2
+git+https://github.com/spacetelescope/nictools.git@1.1.3#egg=nictools
+stistools==1.1
+stsci.image==2.3.0
+stsci.imagemanip==1.1.4
+stwcs==1.4.0
+wfc3tools==1.3.4
+git+https://github.com/spacetelescope/wfpc2tools.git@1.0.3#egg=wfpc2tools
+git+https://github.com/spacetelescope/costools.git@1.2.2#egg=costools
+git+https://github.com/spacetelescope/stsci.skypac@0.9.15#egg=stsci.skypac
+git+https://github.com/spacetelescope/drizzlepac@2.2.4#egg=drizzlepac
diff --git a/etc/hstdp-2018.3a/pkgs/000-dummy.sh b/etc/hstdp-2018.3a/pkgs/000-dummy.sh
new file mode 100644
index 0000000..06bd986
--- /dev/null
+++ b/etc/hstdp-2018.3a/pkgs/000-dummy.sh
@@ -0,0 +1,2 @@
+#!/bin/bash
+exit 0
diff --git a/etc/hstdp-2018.3a/pkgs/001-cfitsio.sh b/etc/hstdp-2018.3a/pkgs/001-cfitsio.sh
new file mode 100644
index 0000000..719b542
--- /dev/null
+++ b/etc/hstdp-2018.3a/pkgs/001-cfitsio.sh
@@ -0,0 +1,15 @@
+#!/bin/bash -e
+
+name=cfitsio
+version=3440
+url=https://heasarc.gsfc.nasa.gov/FTP/software/fitsio/c/${name}${version}.tar.gz
+
+sudo yum install -y libcurl-devel
+curl -LO "${url}"
+tar xf "$(basename ${url})"
+
+pushd "${name}" &>/dev/null
+./configure --prefix="${PREFIX}" --enable-reentrant
+make shared
+make install
+popd &>/dev/null
diff --git a/etc/hstdp-2018.3a/pkgs/002-hstcal.sh b/etc/hstdp-2018.3a/pkgs/002-hstcal.sh
new file mode 100644
index 0000000..8b4ab4f
--- /dev/null
+++ b/etc/hstdp-2018.3a/pkgs/002-hstcal.sh
@@ -0,0 +1,16 @@
+#!/bin/bash -e
+name=hstcal
+version=2.2.0
+url="https://github.com/spacetelescope/${name}"
+
+git clone "${url}"
+pushd "${name}" &>/dev/null
+    # Grab a version of WAF that isn't broken
+    curl -o waf https://waf.io/waf-2.0.12
+    chmod +x waf
+
+    # Build / Install
+    ./waf configure --prefix=${PREFIX} --release-with-symbols --with-cfitsio=${PREFIX}
+    ./waf build
+    ./waf install
+popd &>/dev/null
diff --git a/etc/hstdp-2018.3a/tasks/001-python-packages.sh b/etc/hstdp-2018.3a/tasks/001-python-packages.sh
new file mode 100755
index 0000000..3d89b6a
--- /dev/null
+++ b/etc/hstdp-2018.3a/tasks/001-python-packages.sh
@@ -0,0 +1,40 @@
+#!/bin/bash
+set -e
+set -x
+
+# Uses GLOBAL environment variable: PYTHON_VERSION defined by `docker build` argument
+prefix="${TOOLCHAIN}"
+sysconfdir="${TOOLCHAIN_BUILD}/etc/${PIPELINE}"
+reqdir=${sysconfdir}/pip
+
+export PATH="${prefix}/bin:${PATH}"
+export CFLAGS="-I${prefix}/include"
+export LDFLAGS="-L${prefix}/lib -Wl,-rpath=${prefix}/lib"
+
+function pre()
+{
+    if [[ ! -d ${reqdir} ]]; then
+        # Nothing there, but maybe that's on purpose.
+        exit 0
+    fi
+}
+
+function build()
+{
+    pre
+    # Iterate over pip requirement files
+    for req in ${reqdir}/*
+    do
+        pip install --upgrade --progress-bar=off -r "${req}"
+    done
+    post
+}
+
+function post()
+{
+    rm -rf ~/.cache/pip
+    [[ -d src ]] && rm -rf src
+    [[ -f gmon.out ]] && rm -rf gmon.out
+}
+
+build
diff --git a/etc/hstdp-2018.3a/tasks/002-packages.sh b/etc/hstdp-2018.3a/tasks/002-packages.sh
new file mode 100755
index 0000000..e948120
--- /dev/null
+++ b/etc/hstdp-2018.3a/tasks/002-packages.sh
@@ -0,0 +1,43 @@
+#!/bin/bash
+set -e
+set -x
+
+prefix="${TOOLCHAIN}"
+sysconfdir="${TOOLCHAIN_BUILD}/etc/${PIPELINE}"
+reqdir=${sysconfdir}/pkgs
+blddir=builds
+
+export PATH="${prefix}/bin:${PATH}"
+export CFLAGS="-I${prefix}/include"
+export LDFLAGS="-L${prefix}/lib -Wl,-rpath=${prefix}/lib"
+export PREFIX="${prefix}"
+
+function pre()
+{
+    if [[ ! -d ${reqdir} ]]; then
+        # Nothing there, but maybe that's on purpose.
+        exit 0
+    fi
+    mkdir -p "${blddir}"
+    pushd ${blddir} &>/dev/null
+}
+
+function build()
+{
+    pre
+    # Iterate over binary package build scripts
+    for req in ${reqdir}/*
+    do
+        chmod +x "${req}"
+        "${req}"
+    done
+    post
+}
+
+function post()
+{
+    popd &>/dev/null
+    [[ -d ${blddir} ]] && rm -rf "${blddir}"
+}
+
+build
diff --git a/etc/hstdp-2018.3a/tasks/999-clean.sh b/etc/hstdp-2018.3a/tasks/999-clean.sh
new file mode 100755
index 0000000..7487b9c
--- /dev/null
+++ b/etc/hstdp-2018.3a/tasks/999-clean.sh
@@ -0,0 +1,18 @@
+#!/bin/bash -x
+if [[ ! -f /.dockerenv ]]; then
+    echo "This script cannot be executed outside of a docker container."
+    exit 1
+fi
+
+rm -rf "${HOME}/.astropy"
+rm -rf "${HOME}/.cache"
+rm -rf "${HOME}"/*
+
+sudo yum clean all
+sudo rm -rf /tmp/*
+sudo rm -rf /var/cache/yum
+
+for logfile in /var/log/*
+do
+    sudo truncate --size=0 "${logfile}"
+done
-- 
cgit