Try a different approach using declare -f

3 files changed, 26 insertions, 22 deletions

diff --git a/include/conda.h b/include/conda.h
index c546672..5e8b8d9 100644
--- a/include/conda.h
+++ b/include/conda.h
@@ -192,4 +192,5 @@ int conda_index(const char *path);
  */
 int pip_index_provides(const char *index_url, const char *name, const char *version);
 
+char *conda_runtime_dump(const char *root);
 #endif //STASIS_CONDA_H
diff --git a/src/conda.c b/src/conda.c
index ff55f14..07a39c2 100644
--- a/src/conda.c
+++ b/src/conda.c
@@ -178,20 +178,33 @@ int conda_exec(const char *args) {
     return system(command);
 }
 
+char *conda_runtime_dump(const char *root) {
+    const char *init_script_conda = "/etc/profile.d/conda.sh";
+    const char *init_script_mamba = "/etc/profile.d/mamba.sh";
+    int state = 0;
+    char cmd[BUFSIZ] = {0};
+    sprintf(cmd, "source %s%s; source %s%s; env; declare -f", root, init_script_conda, root, init_script_mamba);
+
+    char *output = shell_output(cmd, &state);
+    if (state) {
+        guard_free(output);
+        return NULL;
+    }
+    return output;
+}
+
 int conda_activate(const char *root, const char *env_name) {
     int fd = -1;
     FILE *fp = NULL;
-    const char *init_script_conda = "/etc/profile.d/conda.sh";
-    const char *init_script_mamba = "/etc/profile.d/mamba.sh";
-    char path_conda[PATH_MAX] = {0};
-    char path_mamba[PATH_MAX] = {0};
     char logfile[PATH_MAX] = {0};
     struct Process proc;
     memset(&proc, 0, sizeof(proc));
 
-    // Where to find conda's init scripts
-    sprintf(path_conda, "%s%s", root, init_script_conda);
-    sprintf(path_mamba, "%s%s", root, init_script_mamba);
+    char *full_runtime = conda_runtime_dump(root);
+    if (!full_runtime) {
+        SYSERROR("%s", "Failed to read variables and functions from the runtime environment");
+        return -1;
+    }
 
     // Set the path to our stdout log
     // Emulate mktemp()'s behavior. Give us a unique file name, but don't use
@@ -207,22 +220,10 @@ int conda_activate(const char *root, const char *env_name) {
     // Configure our process for output to a log file
     strcpy(proc.f_stdout, logfile);
 
-    // Verify conda's init scripts are available
-    if (access(path_conda, F_OK) < 0) {
-        perror(path_conda);
-        remove(logfile);
-        return -1;
-    }
-
-    if (access(path_mamba, F_OK) < 0) {
-        perror(path_mamba);
-        remove(logfile);
-        return -1;
-    }
-
     // Fully activate conda and record its effect on the runtime environment
     char command[PATH_MAX * 3];
-    snprintf(command, sizeof(command) - 1, "source %s; source %s; conda activate %s &>/dev/null; env -0", path_conda, path_mamba, env_name);
+    snprintf(command, sizeof(command) - 1, "%s\nconda activate %s &>/dev/null\nenv -0\n", full_runtime, env_name);
+    guard_free(full_runtime);
     int retval = shell(&proc, command);
     if (retval) {
         // it didn't work; drop out for cleanup
diff --git a/src/delivery.c b/src/delivery.c
index 6dcfb4b..2d2273c 100644
--- a/src/delivery.c
+++ b/src/delivery.c
@@ -1789,7 +1789,9 @@ void delivery_tests_run(struct Delivery *ctx) {
 
                 puts(cmd);
                 char runner_cmd[PATH_MAX] = {0};
-                sprintf(runner_cmd, "set -x\n%s", cmd);
+                char *full_runtime = conda_runtime_dump(ctx->storage.conda_install_prefix);
+                sprintf(runner_cmd, "%s\nset -x\n%s", full_runtime, cmd);
+                guard_free(full_runtime);
                 status = shell(&proc, runner_cmd);
                 if (status) {
                     msg(STASIS_MSG_ERROR, "Script failure: %s\n%s\n\nExit code: %d\n", ctx->tests[i].name, ctx->tests[i].script, status);