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author | Joseph Hunkeler <jhunkeler@gmail.com> | 2015-03-04 21:21:30 -0500 |
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committer | Joseph Hunkeler <jhunkeler@gmail.com> | 2015-03-04 21:21:30 -0500 |
commit | d54fe7c1f704a63824c5bfa0ece65245572e9b27 (patch) | |
tree | afc52015ffc2c74e0266653eecef1c8ef8ba5d91 /bin/calfuse.sh | |
download | calfuse-d54fe7c1f704a63824c5bfa0ece65245572e9b27.tar.gz |
Initial commit
Diffstat (limited to 'bin/calfuse.sh')
-rwxr-xr-x | bin/calfuse.sh | 142 |
1 files changed, 142 insertions, 0 deletions
diff --git a/bin/calfuse.sh b/bin/calfuse.sh new file mode 100755 index 0000000..0cd23a9 --- /dev/null +++ b/bin/calfuse.sh @@ -0,0 +1,142 @@ +#!/bin/sh +#****************************************************************************** +#* Johns Hopkins University +#* Center For Astrophysical Sciences +#* FUSE +#****************************************************************************** +#* +#* Synopsis: calfuse.sh file_name +#* +#* Description: Shell script for processing FUSE Ver 3.2 time-tagged exposures. +#* All messages are written to stdout or stderr. +#* +#* Arguments: char file_name File name to process is 1st command- +#* line argument +#* +#* Returns: Exit codes: +#* 0 Successful execution +#* +#* +#* Environment variables: CF_CALDIR Path to directory which contains the +#* calibration files. +#* CF_IDLDIR Path to CalFUSE IDL directory +#* CF_PIPELINE Flag to determine if CALFUSE +#* is running as part of the JHU +#* pipeline. +#* +#* History: 09/05/07 1.1 bot Adapted from tcsh script +#* +#*****************************************************************************/ + +# Delete files after processing? (Default is no.) +#DELETE_IDF=1 # Delete intermediate data file +#DELETE_BPM=1 # Delete bad-pixel map + +idf=`echo $1 | sed -e "s/raw/idf/g"` +froot=`echo $1 | sed -e "s/raw.fit//g"` +logfile=${froot}.trl +ttag=`echo $froot | grep -c ttag` + + +# Put a timestamp in the log file (the OPUS trailer file). +if [ $ttag = 1 ]; then + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin TTAG file $1" + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin TTAG file $1" >> $logfile 2>&1 +else + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin HIST file $1" + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin HIST file $1" >> $logfile 2>&1 +fi + +cfstat=1 + +# Step 1 -- Generate Intermediate Data File +if [ $ttag = 1 ]; then + cf_ttag_init $1 $idf >> $logfile 2>&1 + cfstat=$? +else + cf_hist_init $1 $idf >> $logfile 2>&1 + cfstat=$? +fi + +# Step 2 -- Convert to FARF +if [ $cfstat = 0 ]; then + cf_convert_to_farf $idf >> $logfile 2>&1 + cfstat=$? +fi + +# Step 3 -- Screen photons +if [ $cfstat = 0 ]; then + cf_screen_photons $idf >> $logfile 2>&1 + cfstat=$? +fi + +# Step 4 -- Remove motions +if [ $cfstat = 0 ]; then + cf_remove_motions $idf >> $logfile 2>&1 + cfstat=$? +fi + +if [ $cfstat = 0 ]; then + if [ ${CF_IDLDIR:-""} != "" ]; then + idlplot_rate.pl $froot >> $logfile 2>&1 + idlplot_spex.pl $froot >> $logfile 2>&1 + fi +fi + +# Step 5 -- Assign wavelength +if [ $cfstat = 0 ]; then + cf_assign_wavelength $idf >> $logfile 2>&1 + cfstat=$? +fi + +# Step 6 -- Flux calibrate +if [ $cfstat = 0 ]; then + cf_flux_calibrate $idf >> $logfile 2>&1 + cfstat=$? +fi + +# Step 7 -- Create a bad-pixel file +if [ $cfstat = 0 ]; then + cf_bad_pixels $idf >> $logfile 2>&1 + cfstat=$? +fi + +# Step 8 -- Extract spectra +if [ $cfstat = 0 ]; then + cf_extract_spectra $idf >> $logfile 2>&1 + cfstat=$? +fi + +# Step 8a -- Delete _bursts.dat file +if [ ${CF_PIPELINE:-""} = "" ]; then + rm -f `echo $1 | sed -e "s/ttagfraw.fit/_bursts.dat/g"` +fi + +# Step 8b -- Delete IDF file +if [ ${DELETE_IDF:-""} != "" ]; then + echo "NOTE: Deleting intermediate data file." + rm -f $idf +fi + +# Step 8c -- Delete bad pixel map (bpm) file +if [ ${DELETE_BPM:-""} != "" ]; then + echo "NOTE: Deleting bad pixel map (bpm) file." + rm -f `echo $1 | sed -e "s/raw/bpm/g"` +fi + +if [ $cfstat = 0 ]; then + if [ $ttag = 1 ]; then + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End TTAG file $1" + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End TTAG file $1" >> $logfile 2>&1 + else + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End HIST file $1" + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End HIST file $1" >> $logfile 2>&1 + fi +else + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Error processing $1" + echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Error processing $1" >> $logfile 2>&1 +fi + +exit $cfstat + +#****************************************************************************** |