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authorJoseph Hunkeler <jhunkeler@gmail.com>2015-03-05 18:05:27 -0500
committerJoseph Hunkeler <jhunkeler@gmail.com>2015-03-05 18:05:27 -0500
commit4a3aef3f7236d2b3267aead61f11c587c6f4bddb (patch)
treebea89287f8cf6290fc230fb82fb11b3b9a5c6e0f /src
parent9166f1762976cb64acfd8c9ecc067132ffefa615 (diff)
downloadcalfuse-4a3aef3f7236d2b3267aead61f11c587c6f4bddb.tar.gz
Further improvements
Diffstat (limited to 'src')
-rw-r--r--src/Makefile.in2
-rw-r--r--src/analysis/Makefile.am2
-rw-r--r--src/analysis/Makefile.in6
-rwxr-xr-xsrc/analysis/cf_make_900_obs.csh193
-rwxr-xr-xsrc/analysis/cf_make_all_obs.csh555
-rw-r--r--src/analysis/gethmjd.h0
-rw-r--r--src/cal/Makefile.in2
-rw-r--r--src/cal/jitter/Makefile.am2
-rw-r--r--src/cal/jitter/Makefile.in6
-rw-r--r--src/fes/Makefile.am2
-rw-r--r--src/fes/Makefile.in6
-rw-r--r--src/fuv/Makefile.am27
-rw-r--r--src/fuv/Makefile.in306
-rw-r--r--src/libcf/Makefile.am3
-rw-r--r--src/libcf/Makefile.in7
-rw-r--r--src/slalib/Makefile.am2
-rw-r--r--src/slalib/Makefile.in6
17 files changed, 76 insertions, 1051 deletions
diff --git a/src/Makefile.in b/src/Makefile.in
index c617f20..df509b3 100644
--- a/src/Makefile.in
+++ b/src/Makefile.in
@@ -97,7 +97,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_HEADER = $(top_builddir)/src/include/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
AM_V_P = $(am__v_P_@AM_V@)
diff --git a/src/analysis/Makefile.am b/src/analysis/Makefile.am
index 42e9122..5c9d665 100644
--- a/src/analysis/Makefile.am
+++ b/src/analysis/Makefile.am
@@ -51,4 +51,4 @@ ttag_lightcurve_mjd2hmjd_SOURCES = ttag_lightcurve_mjd2hmjd.c gethmjd.c
ttag_lightcurve_periodogram_SOURCES = ttag_lightcurve_periodogram.c
LDADD = ../libcf/libcf.la ../slalib/libsla.la $(cfitsio_LIBS)
-AM_CFLAGS = -I../../include -I./ -DCFORTRAN -Df2cFortran
+AM_CFLAGS = -I$(top_srcdir)/include -I./ -DCFORTRAN -Df2cFortran
diff --git a/src/analysis/Makefile.in b/src/analysis/Makefile.in
index f3d2ddd..02ba382 100644
--- a/src/analysis/Makefile.in
+++ b/src/analysis/Makefile.in
@@ -110,7 +110,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_HEADER = $(top_builddir)/src/include/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
@@ -263,7 +263,7 @@ AM_V_at = $(am__v_at_@AM_V@)
am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
am__v_at_0 = @
am__v_at_1 =
-DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
+DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src/include
depcomp = $(SHELL) $(top_srcdir)/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
@@ -531,7 +531,7 @@ ttag_lightcurve_combine_SOURCES = ttag_lightcurve_combine.c
ttag_lightcurve_mjd2hmjd_SOURCES = ttag_lightcurve_mjd2hmjd.c gethmjd.c
ttag_lightcurve_periodogram_SOURCES = ttag_lightcurve_periodogram.c
LDADD = ../libcf/libcf.la ../slalib/libsla.la $(cfitsio_LIBS)
-AM_CFLAGS = -I../../include -I./ -DCFORTRAN -Df2cFortran
+AM_CFLAGS = -I$(top_srcdir)/include -I./ -DCFORTRAN -Df2cFortran
all: all-recursive
.SUFFIXES:
diff --git a/src/analysis/cf_make_900_obs.csh b/src/analysis/cf_make_900_obs.csh
deleted file mode 100755
index 9edbc70..0000000
--- a/src/analysis/cf_make_900_obs.csh
+++ /dev/null
@@ -1,193 +0,0 @@
-#!/usr/local/bin/tcsh -f
-
-#******************************************************************************
-#* Johns Hopkins University
-#* Center For Astrophysical Sciences
-#* FUSE
-#******************************************************************************
-#*
-#* Synopsis: cf_make_900_obs.csh association_file
-#*
-#* Description: This routine is derived from cf_make_all_obs.csh, but modified
-#* to consider only 900+ (airglow) files. Output is a single
-#* quick-look image of the airglow spactrum.
-#*
-#* Extracted spectra are combined, not IDF files.
-#*
-#* When an expected data set is missing, the script stops, cleans
-#* the directory, and returns 1.
-#*
-#* History: 08/08/08 1.00 wvd Create separate quick-look image
-#* for 900+ (airglow) exposures.
-#* Always combine extracted spectra. If
-#* cf_xcorr fails, combine with no shift.
-#* 08/08/08 1.01 wvd Rename airglow quick-look file to
-#* M112580100000airgttagf.gif
-#*
-#*****************************************************************************/
-
-# Delete files after processing? (Default is no.)
-#set DELETE_IDF # Delete intermediate data files
-set DELETE_BPM # Delete bad-pixel map files
-
-# Set program path
-set rm = "/bin/rm -f"
-
-set cf_xcorr = cf_xcorr
-set cf_combine = cf_combine
-set cf_pack = cf_pack
-set cf_nvo = cf_nvo
-set idl_obsplot = idl_obsplot.pl
-set modhead = modhead
-
-# Init var list
-set detector = (1a 2b)
-set channel = (lif sic)
-set resolution = (2 3 4)
-set obsmod = (hist ttag)
-
-# Determine the root name and the program ID
-set asnf = $1
-set rn = ${asnf:s/000asnf.fit//}
-set pid = `echo $rn | awk '{print substr($1, 1, 4)}'`
-
-# Determine the object class
-set tmp_file = `ls ${rn}*fcal.fit | awk '{if (NR == 1) print}'`
-set tmp_buf = `$modhead $tmp_file OBJCLASS`
-set objclass = $tmp_buf[2]
-
-# Clean tmp files that the script will create (safe)
-$rm tmp_xcorr.res tmp_combine.lis
-$rm tmp_good_exp.lis tmp_exp.lis tmp_seg_dn.lis
-$rm DN_${rn}*.fit
-
-foreach om ($obsmod)
- foreach res ($resolution)
- foreach chan ($channel)
- foreach det ($detector)
-
- set ignore_exp_stat = ''
- if ($om == hist) set ignore_exp_stat = -a
- if ($pid == S100) set ignore_exp_stat = -a
- if ($pid == M106) set ignore_exp_stat = -a
-
- # Find exposures that match the current segment
- set seg = $det$chan$res$om
- set readfiles = 0
- ls ${rn}9[0-9][0-9]${seg}fcal.fit |& grep -v 000${seg} > tmp_exp.lis # Keep only "9xx" exposures
- if ($? == 0) then
- set readfiles = 2
- set ignore_exp_stat = -a
- endif
-
- if ($readfiles >= 1) then # There are one or more exposures
-
- echo " "
- echo "*** Processing: $seg ***"
- # [1a][lif] -> [1b][lif], [2b][lif] -> [2a][lif] etc...
- if ($det == 1a) set det2 = 1b
- if ($det == 2b) set det2 = 2a
- set seg2 = $det2$chan$res$om
-
- echo "----- cf_xcorr input -----"
- cat tmp_exp.lis
- echo "----------------------------"
- $cf_xcorr tmp_exp.lis tmp_xcorr.res # Compute shift and sigma_shift
- echo "----- cf_xcorr results -----"
- cat tmp_xcorr.res
- echo "----------------------------"
-
- awk '{if ($3 >= 0) {print $6, $2} else {print $6}}' tmp_xcorr.res > tmp_good_exp.lis
-
- #
- # --- Path 1: Optimize resolution ---
- #
-
- echo "Optimize resolution..."
- set n_good = `cat tmp_good_exp.lis | wc -l`
-
- # Extract [Day + Night] spectra
- set s = DN_${rn}900${seg}fcal.fit
- awk '{print "'$rn'"$1"'$seg'fcal.fit",$2}' tmp_good_exp.lis > tmp_combine.lis # Combine $seg [dn]
- # echo "----- Combining Files ----- "
- # cat tmp_combine.lis
- # echo "Output: " $s
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- # $modhead "${s}[1]" NUM_EXP $n_good
- $modhead "${s}[1]" COMBMETH XCORR
- echo $s >> tmp_seg_dn.lis
-
- set s = DN_${rn}900${seg2}fcal.fit
- awk '{print "'$rn'"$1"'$seg2'fcal.fit",$2}' tmp_good_exp.lis > tmp_combine.lis # Combine $seg2 [dn]
- # echo "----- Combining Files ----- "
- # cat tmp_combine.lis
- # echo "Output: " $s
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- # $modhead "${s}[1]" NUM_EXP $n_good
- $modhead "${s}[1]" COMBMETH XCORR
- echo $s >> tmp_seg_dn.lis
-
- endif
- end
-
- $rm tmp_xcorr.res tmp_combine.lis
- $rm tmp_good_exp.lis tmp_exp.lis
-
- end
-
- # Pack the 8 [detector][channel] pairs together
- if (-e tmp_seg_dn.lis) then
-
- set fcal_all = ${rn}00900all$res${om}fcal.fit # Final output name
- $rm $fcal_all # Clean (safe)
- set n_segs = `cat tmp_seg_dn.lis | wc -l`
-
- if (!($n_segs == 8)) then
-
- @ mseg = 8 - $n_segs
- echo "ERROR: $mseg (day + night) segments are missing"
- $rm tmp_seg_dn.lis
- goto crash
-
- else
-
- $cf_pack tmp_seg_dn.lis $fcal_all
- $rm tmp_seg_dn.lis
-
- # Plot figures, delete unwanted files
- $idl_obsplot {$rn} airglow
- mv ${rn}00900spec${om}f.gif ${rn}00000airg${om}f.gif
- $rm ${rn}00900lif*.gif ${rn}00900sic*.gif
- $rm $fcal_all
-
- endif
- endif
- end
-end
-
-# Clean [dn] files.
-$rm DN_${rn}*.fit
-
-# Delete IDF files
-if $?DELETE_IDF then
- echo "NOTE: Deleting intermediate data files."
- $rm ${rn}*idf.fit
-endif
-
-# Delete bad-pixel-map (bpm) files
-if $?DELETE_BPM then
- echo "NOTE: Deleting bad pixel map (bpm) files."
- $rm ${rn}*bpm.fit
-endif
-
-exit(0)
-
-crash: # Procedure when script crashes
-
-# Clean directory
-$rm tmp_xcorr.res tmp_combine.lis
-$rm tmp_good_exp.lis tmp_exp.lis tmp_seg_dn.lis
-$rm DN_*.fit
-
-# Return 1
-exit(1)
diff --git a/src/analysis/cf_make_all_obs.csh b/src/analysis/cf_make_all_obs.csh
deleted file mode 100755
index 2a97247..0000000
--- a/src/analysis/cf_make_all_obs.csh
+++ /dev/null
@@ -1,555 +0,0 @@
-#!/usr/local/bin/tcsh -f
-
-#******************************************************************************
-#* Johns Hopkins University
-#* Center For Astrophysical Sciences
-#* FUSE
-#******************************************************************************
-#*
-#* Synopsis: cf_make_all_obs.csh association_file
-#*
-#* Description: Creates 3 files from Calfuse output (properly run):
-#*
-#* 1) An "all" file containing 1 extension per detector (= 8).
-#* Each extension contains a combined spectrum from the set
-#* of exposures, using "Xcorr" or "Background" method.
-#* 2) In the case of TTAG data, creates an "ano" file. Same as
-#* the "all" file but considering "night only" exposure time.
-#* 3) A National Virtual Observatory "nvo" file. One extension
-#* containing wavelengths that span the whole FUSE range.
-#*
-#* The Xcorr method consists of co-adding spectra, the latter
-#* being corrected for a possible shift. The Background method
-#* consists of combining all the IDF files.
-#*
-#* The Xcorr test is performed on 4 (detector, channel) pairs, the
-#* method of other pairs are given by them:
-#* LiF 1a -> Lif 1b
-#* LiF 2b -> LiF 2a
-#* SiC 1a -> Sic 1b
-#* Sic 2b -> Sic 2a
-#* In the script, the left segments are referred as to $seg (or
-#* $det) and the right segments are referred as to $seg2 (or
-#* $det2).
-#*
-#* When an expected data set is missing, the script stops, cleans
-#* the directory, and returns 1.
-#*
-#* History: 04/15/05 1.0 tc First release
-#* 08/22/05 1.1 wvd Argument is name of association file.
-#* 10/20/05 1.2 wvd Use idl_obsplot.pl to call cf_obsplot.
-#* 10/25/05 1.3 wvd Add option to delete BPM or IDF files.
-#* 03/21/06 1.4 wvd If there's only one exposure, always
-#* follow the cross-correlation path.
-#* Don't check the number of night-only
-#* spectra before calling cf_pack.
-#* 03/28/06 1.5 wvd If there's no good time in any exposure,
-#* follow the cross-correlation path.
-#* 04/27/06 1.6 wvd Be smarter when discarding 000 files.
-#* Always use cross-corr for HIST data.
-#* 05/23/06 1.7 wvd Move -k to proper spot after cf_combine.
-#* 06/02/06 1.8 wvd If OBJCLASS = 7 (Sky Background)
-#* always combine IDF files.
-#* 06/22/06 1.9 wvd Call idf_combine with -z flag.
-#* 05/24/07 1.10 bot If only 900+ spectra are available,
-#* use them.
-#* 04/04/08 1.11 bot Ignore EXP_STAT in cf_combine for HIST
-#* data.
-#* 07/25/08 1.12 wvd Ignore EXP_STAT in cf_combine and
-#* idf_combine for BR-EARTH observations
-#* (S100, M106, and 900+ exposures).
-#* 08/08/08 1.13 wvd Don't ignore EXP_STAT for 900+ exposures.
-#* 08/15/08 1.14 wvd Call cf_make_900_obs.csh
-#* to make quick-look airglow plot.
-#*
-#*****************************************************************************/
-
-# Delete files after processing? (Default is no.)
-#set DELETE_IDF # Delete intermediate data files
-#set DELETE_BPM # Delete bad-pixel map files
-
-# Set program path
-set rm = "/bin/rm -f"
-
-set cf_xcorr = cf_xcorr
-set cf_combine = cf_combine
-set cf_pack = cf_pack
-set cf_nvo = cf_nvo
-set idl_obsplot = idl_obsplot.pl
-set modhead = modhead
-
-#set cf_xcorr = /home/vela/civeit/Work/CalFuse/Xcorr/New/cf_xcorr
-#set cf_combine = /home/vela/civeit/Work/CalFuse/Shiftexp/cf_combine
-#set cf_pack = /home/vela/civeit/Work/CalFuse/Pack/cf_pack
-#set cf_nvo = /home/vela/civeit/Work/CalFuse/Nvo/cf_nvo
-#set modhead = /home/vela/civeit/local/bin/modhead
-
-#set cf_obsplot = /data1/fuse/calfuse/v3.1/idl/cf_obsplot.pro
-
-# Init var list
-set detector = (1a 2b)
-set channel = (lif sic)
-set resolution = (2 3 4)
-set obsmod = (hist ttag)
-
-# Determine the root name and the program ID
-set asnf = $1
-set rn = ${asnf:s/000asnf.fit//}
-set pid = `echo $rn | awk '{print substr($1, 1, 4)}'`
-
-# Determine the object class
-set tmp_file = `ls ${rn}*fcal.fit | awk '{if (NR == 1) print}'`
-set tmp_buf = `$modhead $tmp_file OBJCLASS`
-set objclass = $tmp_buf[2]
-
-# Clean tmp files that the script will create (safe)
-$rm tmp_xcorr.res tmp_bpm1.lis tmp_bpm2.lis tmp_combine.lis tmp_night_exp.lis
-$rm tmp_all_night_exp.lis tmp_good_exp.lis tmp_exp.lis tmp_seg_dn.lis tmp_seg_no.lis
-$rm DN_${rn}*.fit NO_${rn}*.fit
-
-foreach om ($obsmod)
- foreach res ($resolution)
- foreach chan ($channel)
- foreach det ($detector)
-
- set ignore_exp_stat = ''
- if ($om == hist) set ignore_exp_stat = -a
- if ($pid == S100) set ignore_exp_stat = -a
- if ($pid == M106) set ignore_exp_stat = -a
-
- # Find exposures that match the current segment
- set seg = $det$chan$res$om
- set readfiles = 0
- ls ${rn}[0-8][0-9][0-9]${seg}fcal.fit |& grep -v 000${seg} > tmp_exp.lis # Reject EXP "9xx" and "000"
-
- if ($? == 0) then
- set readfiles = 1
- else
- ls ${rn}9[0-9][0-9]${seg}fcal.fit |& grep -v 000${seg} > tmp_exp.lis # Keep only "9xx" exposures
- if ($? == 0) set readfiles = 2
- endif
-
- if ($readfiles >= 1) then # There are one or more exposures
-
- echo " "
- echo "*** Processing: $seg ***"
- # [1a][lif] -> [1b][lif], [2b][lif] -> [2a][lif] etc...
- if ($det == 1a) set det2 = 1b
- if ($det == 2b) set det2 = 2a
- set seg2 = $det2$chan$res$om
-
- echo "----- cf_xcorr input -----"
- cat tmp_exp.lis
- echo "----------------------------"
- $cf_xcorr tmp_exp.lis tmp_xcorr.res # Compute shift and sigma_shift
- echo "----- cf_xcorr results -----"
- cat tmp_xcorr.res
- echo "----------------------------"
-
- awk '{if ($5 > 0) print $6, $4, $5}' tmp_xcorr.res > tmp_all_night_exp.lis
- awk '{if ($3 >= 0) print $6, $2}' tmp_xcorr.res > tmp_good_exp.lis
- awk '{if (($3 >= 0) && ($5 > 0)) print $6, $2, $4, $5}' tmp_xcorr.res > tmp_night_exp.lis
- set time_good = `awk 'BEGIN{$t = 0} {if ($3 >= 0) $t = $t + $4} END{print $t}' tmp_xcorr.res`
- set time_bad = `awk 'BEGIN{$t = 0} {if ($3 < 0) $t = $t + $4} END{print $t}' tmp_xcorr.res`
- echo "Xcorr time: $time_good - Background time: $time_bad"
- set n_exp = `cat tmp_xcorr.res | wc -l`
-
- if (($time_good > 2 * $time_bad && $objclass != 7) || ($time_good == 0 && $time_bad == 0) || $n_exp == 1 || $om == hist) then
-
- #
- # --- Path 1: Optimize resolution ---
- #
-
- echo "Optimize resolution..."
- set n_good = `cat tmp_good_exp.lis | wc -l`
-
- # Extract [Day + Night] spectra
- set s = DN_${rn}000${seg}fcal.fit
- awk '{print "'$rn'"$1"'$seg'fcal.fit",$2}' tmp_good_exp.lis > tmp_combine.lis # Combine $seg [dn]
- # echo "----- Combining Files ----- "
- # cat tmp_combine.lis
- # echo "Output: " $s
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- # $modhead "${s}[1]" NUM_EXP $n_good
- $modhead "${s}[1]" COMBMETH XCORR
- echo $s >> tmp_seg_dn.lis
-
- set s = DN_${rn}000${seg2}fcal.fit
- awk '{print "'$rn'"$1"'$seg2'fcal.fit",$2}' tmp_good_exp.lis > tmp_combine.lis # Combine $seg2 [dn]
- # echo "----- Combining Files ----- "
- # cat tmp_combine.lis
- # echo "Output: " $s
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- # $modhead "${s}[1]" NUM_EXP $n_good
- $modhead "${s}[1]" COMBMETH XCORR
- echo $s >> tmp_seg_dn.lis
-
- set n_night = `cat tmp_night_exp.lis | wc -l`
- if ($om == ttag && $n_night > 0) then # Create and combine night only files
-
- echo "*** Creating night only files ***"
- set exp_nums = `awk '{print $1}' tmp_night_exp.lis`
-
- foreach exp ($exp_nums)
-
- # Create night-only BPM and FCAL files if they do not already exist.
- set bno1 = NO_$rn$exp$det${om}fbpm.fit # Bad-pixel maps
- set bno2 = NO_$rn$exp$det2${om}fbpm.fit
- set cno1 = NO_$rn$exp${seg}fcal.fit # Extracted spectra
- set cno2 = NO_$rn$exp${seg2}fcal.fit
-
- set etime = `egrep "^$exp" tmp_night_exp.lis | awk '{print $3}'`
- set ntime = `egrep "^$exp" tmp_night_exp.lis | awk '{print $4}'`
- set ratio = `egrep "^$exp" tmp_night_exp.lis | awk '{printf "%.0f", 0.5+$4/$3*10.}'`
-
- if (!(-e $cno1)) then
- if ($etime == $ntime) then
- echo "$cno1 is a symbolic link to $rn$exp${seg}fcal.fit"
- ln -s $rn$exp${seg}fcal.fit $cno1
- else
-
- set idf_file = $rn$exp$det${om}fidf.fit
- if (!(-e $bno1)) then
- if ($ratio > 9) then
- echo "$bno1 is a symbolic link to $rn$exp$det${om}fbpm.fit"
- ln -s $rn$exp$det${om}fbpm.fit $bno1
- else
- echo "Creating BPM: $bno1 ..."
- cf_bad_pixels -n $bno1 $idf_file
- endif
- endif
-
- echo "Creating (LiF + SiC) FCAL: $cno1 ..."
- cf_extract_spectra -n $bno1 -r NO_$rn$exp $idf_file # Existence of $bno1 is not required
- endif
- endif
-
- if (!(-e $cno2)) then
- if ($etime == $ntime) then
- echo "Using a symbolic link to $cno2"
- ln -s $rn$exp${seg2}fcal.fit NO_$rn$exp${seg2}fcal.fit
- else
-
- set idf_file = $rn$exp$det2${om}fidf.fit
- if (!(-e $bno2)) then
- if ($ratio > 9) then
- echo "Using a symbolic link to $bno2"
- ln -s $rn$exp$det2${om}fbpm.fit NO_$rn$exp$det2${om}fbpm.fit
- else
- echo "Creating BPM: $bno2 ..."
- cf_bad_pixels -n $bno2 $idf_file
- endif
- endif
-
- echo "Creating (LiF + SiC) FCAL: $cno2 ..."
- cf_extract_spectra -n $bno2 -r NO_$rn$exp $idf_file # Existence of $bno2 is not required
- endif
- endif
-
- end
-
- # Combine exposures into a single spectrum.
- set s = NO_${rn}000${seg}fcal.fit
- awk '{print "NO_'$rn'"$1"'$seg'fcal.fit",$2}' tmp_night_exp.lis > tmp_combine.lis # Combine $seg [no]
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- # $modhead "${s}[1]" NUM_EXP $n_night
- $modhead "${s}[0]" DAYNIGHT NIGHT
- $modhead "${s}[1]" COMBMETH XCORR
- echo $s >> tmp_seg_no.lis
-
- set s = NO_${rn}000${seg2}fcal.fit
- awk '{print "NO_'$rn'"$1"'$seg2'fcal.fit",$2}' tmp_night_exp.lis > tmp_combine.lis # Combine $seg2 [no]
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- # $modhead "${s}[1]" NUM_EXP $n_night
- $modhead "${s}[0]" DAYNIGHT NIGHT
- $modhead "${s}[1]" COMBMETH XCORR
- echo $s >> tmp_seg_no.lis
-
- endif
-
- else
-
- #
- # --- Path 2: Optimize background ---
- #
-
- echo "Optimize background..."
-
- # Combine IDF files
- set idf1_all = DN_${rn}000$det${om}fidf.fit # Same for [dn] and [no]
- set idf2_all = DN_${rn}000$det2${om}fidf.fit
-
- if (!(-e $idf1_all)) then
- echo "Creating IDF: $idf1_all ..."
- if ($readfiles == 1) then
- ls ${rn}[0-8][0-9][0-9]$det${om}fidf.fit |& grep -v 000${det} > tmp_idf.lis # Reject EXP "9xx" and "000"
- else
- ls ${rn}9[0-9][0-9]$det${om}fidf.fit |& grep -v 000${det} > tmp_idf.lis # Consider only airglow
- endif
- if ($? == 0) then # IDF files exist
-
- set idf_lis = `awk '{printf "%s ",$1}' tmp_idf.lis`
- # echo "Combining IDF files: " $idf_lis
- idf_combine -cz $ignore_exp_stat $idf1_all $idf_lis # Create combined IDF file for $seg
- $rm tmp_idf.lis
-
- else
-
- echo "ERROR: IDF files are missing"
- $rm tmp_idf.lis
- goto crash
-
- endif
- endif
-
- if (!(-e $idf2_all)) then
- echo "Creating IDF: $idf2_all ..."
- if ($readfiles == 1) then
- ls ${rn}[0-8][0-9][0-9]$det2${om}fidf.fit |& grep -v 000${det2} > tmp_idf.lis # Reject EXP "9xx" and "000"
- else
- ls ${rn}9[0-9][0-9]$det2${om}fidf.fit |& grep -v 000${det2} > tmp_idf.lis # Consider only airglow
- endif
- if ($? == 0) then # IDF files exist
-
- set idf_lis = `awk '{printf "%s ",$1}' tmp_idf.lis`
- # echo "Combining IDF files: " $idf_lis
- idf_combine -cz $ignore_exp_stat $idf2_all $idf_lis # Create combined IDF file for $seg2
- $rm tmp_idf.lis
-
- else
-
- echo "ERROR: IDF files are missing"
- $rm tmp_idf.lis
- goto crash
-
- endif
- endif
-
- # Get the number of (valid) combined IDF files
- set tmp_buf = `$modhead $idf1_all NSPEC`
- set n_comb1 = $tmp_buf[3]
- set tmp_buf = `$modhead $idf1_all SPEC001`
- set idf1_1 = $tmp_buf[3]
- set tmp_buf = `$modhead $idf2_all NSPEC`
- set n_comb2 = $tmp_buf[3]
- set tmp_buf = `$modhead $idf2_all SPEC001`
- set idf2_1 = $tmp_buf[3]
-
- # Combine BPM files
- set bpm1_all = DN_${rn}000$det${om}fbpm.fit
- set bpm2_all = DN_${rn}000$det2${om}fbpm.fit
-
- if (!(-e $bpm1_all)) then
- echo "Combine all BPM (from IDF): $bpm1_all ..."
- bpm_combine $bpm1_all $idf1_all # Create combined BPM file [dn] for $seg
- endif
-
- if (!(-e $bpm2_all)) then
- echo "Combine all BPM (from IDF): $bpm2_all ..."
- bpm_combine $bpm2_all $idf2_all # Idem for $seg2
- endif
-
- # Extract [Day + Night] spectra
- set s = DN_${rn}000${seg}fcal.fit
- set xxx = DN_${rn}xxx${seg}fcal.fit
- if (!(-e $xxx)) cf_extract_spectra -r DN_${rn}xxx $idf1_all # Avoid overwrite LiF | SiC
- echo $xxx > tmp_combine.lis
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- $modhead "${s}[0]" NSPEC $n_comb1
- $modhead "${s}[0]" SPEC001 $idf1_1
- $modhead "${s}[1]" COMBMETH BACKGRND
- echo $s >> tmp_seg_dn.lis
-
- set s = DN_${rn}000${seg2}fcal.fit
- set xxx = DN_${rn}xxx${seg2}fcal.fit
- if (!(-e $xxx)) cf_extract_spectra -r DN_${rn}xxx $idf2_all # Avoid overwrite LiF | SiC
- echo $xxx > tmp_combine.lis
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- $modhead "${s}[0]" NSPEC $n_comb2
- $modhead "${s}[0]" SPEC001 $idf2_1
- $modhead "${s}[1]" COMBMETH BACKGRND
- echo $s >> tmp_seg_dn.lis
-
- set n_night = `cat tmp_all_night_exp.lis | wc -l`
- if ($om == ttag && $n_night > 0) then # Create and combine night only files
-
- echo "*** Creating night only files ***"
- set exp_nums = `awk '{print $1}' tmp_all_night_exp.lis`
- $rm tmp_bpm1.lis tmp_bpm2.lis
-
- foreach exp ($exp_nums)
-
- # Create bpm night only files (if they do not exist yet)
- set bno1 = NO_$rn$exp$det${om}fbpm.fit
- set bno2 = NO_$rn$exp$det2${om}fbpm.fit
-
- set idf_file = $rn$exp$det${om}fidf.fit
- if (!(-e $bno1)) then
- echo "Creating BPM: $bno1 ..."
- cf_bad_pixels -n $bno1 $idf_file
- endif
- if (-e $bno1) echo $bno1 >> tmp_bpm1.lis # If valid, add in $seg list
-
- set idf_file = $rn$exp$det2${om}fidf.fit
- if (!(-e $bno2)) then
- echo "Creating BPM: $bno2 ..."
- cf_bad_pixels -n $bno2 $idf_file
- endif
- if (-e $bno2) echo $bno2 >> tmp_bpm2.lis # If valid, add in $seg2 list
-
- end
-
-
- # Combine BPM for $seg and extract spectra
-
- set bpm1_all = NO_${rn}000$det${om}fbpm.fit
- set n_bpm = `cat tmp_bpm1.lis | wc -l`
- echo "Number of valid BPM files: $n_bpm"
-
- if ($n_bpm > 0) then
-
- echo $n_bpm > tmp_bpm.lis
- cat tmp_bpm1.lis >> tmp_bpm.lis
-
- if (!(-e $bpm1_all)) then
- echo "Combine all BPM (from list): $bpm1_all ..."
- bpm_combine $bpm1_all tmp_bpm.lis # Create combined BPM file [no] for $seg
- endif
- $rm tmp_bpm.lis
-
- endif
-
- # Extract [Night only] spectra. The existence of $bpm1_all is not required
- set s = NO_${rn}000${seg}fcal.fit
- set xxx = NO_${rn}xxx${seg}fcal.fit
- if (!(-e $xxx)) cf_extract_spectra -n $bpm1_all -r NO_${rn}xxx $idf1_all # Avoid overwrite LiF | SiC
- echo $xxx > tmp_combine.lis
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- $modhead "${s}[0]" NSPEC $n_comb1
- $modhead "${s}[0]" SPEC001 $idf1_1
- $modhead "${s}[1]" COMBMETH BACKGRND
- echo $s >> tmp_seg_no.lis
-
-
- # Combine BPM for $seg2 and extract spectra
-
- set bpm2_all = NO_${rn}000$det2${om}fbpm.fit
- set n_bpm = `cat tmp_bpm2.lis | wc -l`
- echo "Number of valid BPM files: $n_bpm"
-
- if ($n_bpm > 0) then
-
- echo $n_bpm > tmp_bpm.lis
- cat tmp_bpm2.lis >> tmp_bpm.lis
-
- if (!(-e $bpm2_all)) then
- echo "Combine all BPM (from list): $bpm2_all ..."
- bpm_combine $bpm2_all tmp_bpm.lis # Create combined BPM file [no] for $seg2
- endif
- $rm tmp_bpm.lis
-
- endif
-
- # Extract [Night only] spectra. The existence of $bpm2_all is not required
- set s = NO_${rn}000${seg2}fcal.fit
- set xxx = NO_${rn}xxx${seg2}fcal.fit
- if (!(-e $xxx)) cf_extract_spectra -n $bpm2_all -r NO_${rn}xxx $idf2_all # Avoid overwrite LiF | SiC
- echo $xxx > tmp_combine.lis
- $cf_combine -k $ignore_exp_stat tmp_combine.lis $s
- $modhead "${s}[0]" NSPEC $n_comb2
- $modhead "${s}[0]" SPEC001 $idf2_1
- $modhead "${s}[1]" COMBMETH BACKGRND
- echo $s >> tmp_seg_no.lis
-
- endif
- endif
- endif
- end
-
- $rm tmp_xcorr.res tmp_bpm1.lis tmp_bpm2.lis tmp_combine.lis
- $rm tmp_all_night_exp.lis tmp_good_exp.lis tmp_exp.lis tmp_night_exp.lis
-
- end
-
- # Pack the 8 [detector][channel] pairs together ([dn] and [no] for ttag)
- if (-e tmp_seg_dn.lis) then
-
- set fcal_all = ${rn}00000all$res${om}fcal.fit # Final output name
- $rm $fcal_all # Clean (safe)
- set n_segs = `cat tmp_seg_dn.lis | wc -l`
-
- if (!($n_segs == 8)) then
-
- @ mseg = 8 - $n_segs
- echo "ERROR: $mseg (day + night) segments are missing"
- $rm tmp_seg_dn.lis
- goto crash
-
- else
-
- $cf_pack tmp_seg_dn.lis $fcal_all
- $rm tmp_seg_dn.lis
-
- # Plot figures
- $idl_obsplot {$rn}
-
- # Create National Virtual Observatory file
- set nvo_file = ${rn}00000nvo$res${om}fcal.fit
- $rm $nvo_file # Clean (safe)
- $cf_nvo $fcal_all $nvo_file # Create file
-
- if (-e tmp_seg_no.lis) then
-
- set fcal_all = ${rn}00000ano$res${om}fcal.fit # Final output name
- $rm $fcal_all # Clean (safe)
- set n_segs = `cat tmp_seg_no.lis | wc -l`
-
- # if (!($n_segs == 8)) then
- #
- # @ mseg = 8 - $n_segs
- # echo "ERROR: $mseg (night only) segments are missing"
- # $rm tmp_seg_no.lis
- # # goto crash
- #
- # else
-
- $cf_pack tmp_seg_no.lis $fcal_all
- $rm tmp_seg_no.lis
-
- # endif
-
- endif
- endif
- endif
- end
-end
-
-# Clean [dn] and [no] files. Just keep all, (ano) and nvo
-$rm DN_${rn}*.fit NO_${rn}*.fit
-
-# Delete IDF files
-if $?DELETE_IDF then
- echo "NOTE: Deleting intermediate data files."
- $rm ${rn}*idf.fit
-endif
-
-# Delete bad-pixel-map (bpm) files
-if $?DELETE_BPM then
- echo "NOTE: Deleting bad pixel map (bpm) files."
- $rm ${rn}*bpm.fit
-endif
-
-# Call routine to make quick-look airglow plot.
-cf_make_900_obs.csh $1
-
-exit(0)
-
-crash: # Procedure when script crashes
-
-# Clean directory
-$rm tmp_xcorr.res tmp_bpm1.lis tmp_bpm2.lis tmp_combine.lis tmp_night_exp.lis
-$rm tmp_all_night_exp.lis tmp_good_exp.lis tmp_exp.lis tmp_seg_dn.lis tmp_seg_no.lis
-$rm DN_*.fit NO_*.fit
-
-# Return 1
-exit(1)
diff --git a/src/analysis/gethmjd.h b/src/analysis/gethmjd.h
deleted file mode 100644
index e69de29..0000000
--- a/src/analysis/gethmjd.h
+++ /dev/null
diff --git a/src/cal/Makefile.in b/src/cal/Makefile.in
index d419942..7bd0ca3 100644
--- a/src/cal/Makefile.in
+++ b/src/cal/Makefile.in
@@ -97,7 +97,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_HEADER = $(top_builddir)/src/include/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
AM_V_P = $(am__v_P_@AM_V@)
diff --git a/src/cal/jitter/Makefile.am b/src/cal/jitter/Makefile.am
index 693ae7a..2eaa6d0 100644
--- a/src/cal/jitter/Makefile.am
+++ b/src/cal/jitter/Makefile.am
@@ -4,4 +4,4 @@ bin_PROGRAMS = cf_jitter_diag \
cf_jitter_diag_SOURCES = cf_jitter_diag.c
cf_jitter_SOURCES = cf_jitter.c
LDADD = ../../libcf/libcf.la ../../slalib/libsla.la $(cfitsio_LIBS)
-AM_CFLAGS = -I../../../include -I./ -DCFORTRAN -Df2cFortran $(cfitsio_CFLAGS)
+AM_CFLAGS = -I$(top_srcdir)/include -I./ -DCFORTRAN -Df2cFortran $(cfitsio_CFLAGS)
diff --git a/src/cal/jitter/Makefile.in b/src/cal/jitter/Makefile.in
index 31675d5..17bfb6f 100644
--- a/src/cal/jitter/Makefile.in
+++ b/src/cal/jitter/Makefile.in
@@ -99,7 +99,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_HEADER = $(top_builddir)/src/include/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
@@ -131,7 +131,7 @@ AM_V_at = $(am__v_at_@AM_V@)
am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
am__v_at_0 = @
am__v_at_1 =
-DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
+DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src/include
depcomp = $(SHELL) $(top_srcdir)/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
@@ -351,7 +351,7 @@ SUBDIRS = .
cf_jitter_diag_SOURCES = cf_jitter_diag.c
cf_jitter_SOURCES = cf_jitter.c
LDADD = ../../libcf/libcf.la ../../slalib/libsla.la $(cfitsio_LIBS)
-AM_CFLAGS = -I../../../include -I./ -DCFORTRAN -Df2cFortran $(cfitsio_CFLAGS)
+AM_CFLAGS = -I$(top_srcdir)/include -I./ -DCFORTRAN -Df2cFortran $(cfitsio_CFLAGS)
all: all-recursive
.SUFFIXES:
diff --git a/src/fes/Makefile.am b/src/fes/Makefile.am
index 7aba311..ffeee17 100644
--- a/src/fes/Makefile.am
+++ b/src/fes/Makefile.am
@@ -5,4 +5,4 @@ cf_calfes_SOURCES = \
cf_fes_cal.c cf_fes_get_cal_image.c cf_limbang.c \
cf_fes_apply_bias.c cf_fes_apply_flat.c cf_fes_apply_mask.c
cf_calfes_LDADD = ../slalib/libsla.la ../libcf/libcf.la
-cf_calfes_CFLAGS = -I../../include -I./
+cf_calfes_CFLAGS = -I$(top_srcdir)/include -I./
diff --git a/src/fes/Makefile.in b/src/fes/Makefile.in
index f63f549..2a1d28f 100644
--- a/src/fes/Makefile.in
+++ b/src/fes/Makefile.in
@@ -99,7 +99,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_HEADER = $(top_builddir)/src/include/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
@@ -135,7 +135,7 @@ AM_V_at = $(am__v_at_@AM_V@)
am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
am__v_at_0 = @
am__v_at_1 =
-DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
+DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src/include
depcomp = $(SHELL) $(top_srcdir)/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
@@ -358,7 +358,7 @@ cf_calfes_SOURCES = \
cf_fes_apply_bias.c cf_fes_apply_flat.c cf_fes_apply_mask.c
cf_calfes_LDADD = ../slalib/libsla.la ../libcf/libcf.la
-cf_calfes_CFLAGS = -I../../include -I./
+cf_calfes_CFLAGS = -I$(top_srcdir)/include -I./
all: all-recursive
.SUFFIXES:
diff --git a/src/fuv/Makefile.am b/src/fuv/Makefile.am
index 2772a69..efeaa71 100644
--- a/src/fuv/Makefile.am
+++ b/src/fuv/Makefile.am
@@ -1,6 +1,6 @@
SUBDIRS = .
BUILD_LIBS = ../slalib/libsla.la ../libcf/libcf.la $(cfitsio_LIBS)
-BUILD_FLAGS = -I../../include -I./ $(cfitsio_CFLAGS)
+BUILD_FLAGS = -I../include -I./ $(cfitsio_CFLAGS)
bin_PROGRAMS = cf_assign_wavelength \
cf_bad_pixels \
cf_convert_to_farf \
@@ -24,26 +24,5 @@ cf_remove_motions_SOURCES = cf_remove_motions.c
cf_screen_photons_SOURCES = cf_screen_photons.c
cf_ttag_init_SOURCES = cf_ttag_init.c
-cf_assign_wavelength_LDADD = $(BUILD_LIBS)
-cf_bad_pixels_LDADD = $(BUILD_LIBS)
-cf_convert_to_farf_LDADD = $(BUILD_LIBS)
-cf_countmap_LDADD = $(BUILD_LIBS)
-cf_extract_spectra_LDADD = $(BUILD_LIBS)
-cf_flux_calibrate_LDADD = $(BUILD_LIBS)
-cf_gainmap_LDADD = $(BUILD_LIBS)
-cf_hist_init_LDADD = $(BUILD_LIBS)
-cf_remove_motions_LDADD = $(BUILD_LIBS)
-cf_screen_photons_LDADD = $(BUILD_LIBS)
-cf_ttag_init_LDADD = $(BUILD_LIBS)
-
-cf_assign_wavelength_CFLAGS = $(BUILD_FLAGS)
-cf_bad_pixels_CFLAGS = $(BUILD_FLAGS)
-cf_convert_to_farf_CFLAGS = $(BUILD_FLAGS)
-cf_countmap_CFLAGS = $(BUILD_FLAGS)
-cf_extract_spectra_CFLAGS = $(BUILD_FLAGS)
-cf_flux_calibrate_CFLAGS = $(BUILD_FLAGS)
-cf_gainmap_CFLAGS = $(BUILD_FLAGS)
-cf_hist_init_CFLAGS = $(BUILD_FLAGS)
-cf_remove_motions_CFLAGS = $(BUILD_FLAGS)
-cf_screen_photons_CFLAGS = $(BUILD_FLAGS)
-cf_ttag_init_CFLAGS = $(BUILD_FLAGS)
+LDADD = $(BUILD_LIBS)
+AM_CFLAGS = $(BUILD_FLAGS)
diff --git a/src/fuv/Makefile.in b/src/fuv/Makefile.in
index d40613a..80d7a39 100644
--- a/src/fuv/Makefile.in
+++ b/src/fuv/Makefile.in
@@ -104,14 +104,14 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_HEADER = $(top_builddir)/src/include/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__installdirs = "$(DESTDIR)$(bindir)"
PROGRAMS = $(bin_PROGRAMS)
-am_cf_assign_wavelength_OBJECTS = \
- cf_assign_wavelength-cf_assign_wavelength.$(OBJEXT)
+am_cf_assign_wavelength_OBJECTS = cf_assign_wavelength.$(OBJEXT)
cf_assign_wavelength_OBJECTS = $(am_cf_assign_wavelength_OBJECTS)
+cf_assign_wavelength_LDADD = $(LDADD)
am__DEPENDENCIES_1 =
am__DEPENDENCIES_2 = ../slalib/libsla.la ../libcf/libcf.la \
$(am__DEPENDENCIES_1)
@@ -120,80 +120,46 @@ AM_V_lt = $(am__v_lt_@AM_V@)
am__v_lt_ = $(am__v_lt_@AM_DEFAULT_V@)
am__v_lt_0 = --silent
am__v_lt_1 =
-cf_assign_wavelength_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
- $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
- $(cf_assign_wavelength_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
- $(LDFLAGS) -o $@
-am_cf_bad_pixels_OBJECTS = cf_bad_pixels-cf_bad_pixels.$(OBJEXT)
+am_cf_bad_pixels_OBJECTS = cf_bad_pixels.$(OBJEXT)
cf_bad_pixels_OBJECTS = $(am_cf_bad_pixels_OBJECTS)
+cf_bad_pixels_LDADD = $(LDADD)
cf_bad_pixels_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_bad_pixels_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
- $(LIBTOOLFLAGS) --mode=link $(CCLD) $(cf_bad_pixels_CFLAGS) \
- $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
-am_cf_convert_to_farf_OBJECTS = \
- cf_convert_to_farf-cf_convert_to_farf.$(OBJEXT)
+am_cf_convert_to_farf_OBJECTS = cf_convert_to_farf.$(OBJEXT)
cf_convert_to_farf_OBJECTS = $(am_cf_convert_to_farf_OBJECTS)
+cf_convert_to_farf_LDADD = $(LDADD)
cf_convert_to_farf_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_convert_to_farf_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
- $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
- $(cf_convert_to_farf_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
- $(LDFLAGS) -o $@
-am_cf_countmap_OBJECTS = cf_countmap-cf_countmap.$(OBJEXT)
+am_cf_countmap_OBJECTS = cf_countmap.$(OBJEXT)
cf_countmap_OBJECTS = $(am_cf_countmap_OBJECTS)
+cf_countmap_LDADD = $(LDADD)
cf_countmap_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_countmap_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
- $(LIBTOOLFLAGS) --mode=link $(CCLD) $(cf_countmap_CFLAGS) \
- $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
-am_cf_extract_spectra_OBJECTS = \
- cf_extract_spectra-cf_extract_spectra.$(OBJEXT)
+am_cf_extract_spectra_OBJECTS = cf_extract_spectra.$(OBJEXT)
cf_extract_spectra_OBJECTS = $(am_cf_extract_spectra_OBJECTS)
+cf_extract_spectra_LDADD = $(LDADD)
cf_extract_spectra_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_extract_spectra_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
- $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
- $(cf_extract_spectra_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) \
- $(LDFLAGS) -o $@
-am_cf_flux_calibrate_OBJECTS = \
- cf_flux_calibrate-cf_flux_calibrate.$(OBJEXT)
+am_cf_flux_calibrate_OBJECTS = cf_flux_calibrate.$(OBJEXT)
cf_flux_calibrate_OBJECTS = $(am_cf_flux_calibrate_OBJECTS)
+cf_flux_calibrate_LDADD = $(LDADD)
cf_flux_calibrate_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_flux_calibrate_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
- $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
- $(cf_flux_calibrate_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
- -o $@
-am_cf_gainmap_OBJECTS = cf_gainmap-cf_gainmap.$(OBJEXT)
+am_cf_gainmap_OBJECTS = cf_gainmap.$(OBJEXT)
cf_gainmap_OBJECTS = $(am_cf_gainmap_OBJECTS)
+cf_gainmap_LDADD = $(LDADD)
cf_gainmap_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_gainmap_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
- $(LIBTOOLFLAGS) --mode=link $(CCLD) $(cf_gainmap_CFLAGS) \
- $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
-am_cf_hist_init_OBJECTS = cf_hist_init-cf_hist_init.$(OBJEXT)
+am_cf_hist_init_OBJECTS = cf_hist_init.$(OBJEXT)
cf_hist_init_OBJECTS = $(am_cf_hist_init_OBJECTS)
+cf_hist_init_LDADD = $(LDADD)
cf_hist_init_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_hist_init_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
- $(LIBTOOLFLAGS) --mode=link $(CCLD) $(cf_hist_init_CFLAGS) \
- $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
-am_cf_remove_motions_OBJECTS = \
- cf_remove_motions-cf_remove_motions.$(OBJEXT)
+am_cf_remove_motions_OBJECTS = cf_remove_motions.$(OBJEXT)
cf_remove_motions_OBJECTS = $(am_cf_remove_motions_OBJECTS)
+cf_remove_motions_LDADD = $(LDADD)
cf_remove_motions_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_remove_motions_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
- $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
- $(cf_remove_motions_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
- -o $@
-am_cf_screen_photons_OBJECTS = \
- cf_screen_photons-cf_screen_photons.$(OBJEXT)
+am_cf_screen_photons_OBJECTS = cf_screen_photons.$(OBJEXT)
cf_screen_photons_OBJECTS = $(am_cf_screen_photons_OBJECTS)
+cf_screen_photons_LDADD = $(LDADD)
cf_screen_photons_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_screen_photons_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC \
- $(AM_LIBTOOLFLAGS) $(LIBTOOLFLAGS) --mode=link $(CCLD) \
- $(cf_screen_photons_CFLAGS) $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) \
- -o $@
-am_cf_ttag_init_OBJECTS = cf_ttag_init-cf_ttag_init.$(OBJEXT)
+am_cf_ttag_init_OBJECTS = cf_ttag_init.$(OBJEXT)
cf_ttag_init_OBJECTS = $(am_cf_ttag_init_OBJECTS)
+cf_ttag_init_LDADD = $(LDADD)
cf_ttag_init_DEPENDENCIES = $(am__DEPENDENCIES_2)
-cf_ttag_init_LINK = $(LIBTOOL) $(AM_V_lt) --tag=CC $(AM_LIBTOOLFLAGS) \
- $(LIBTOOLFLAGS) --mode=link $(CCLD) $(cf_ttag_init_CFLAGS) \
- $(CFLAGS) $(AM_LDFLAGS) $(LDFLAGS) -o $@
AM_V_P = $(am__v_P_@AM_V@)
am__v_P_ = $(am__v_P_@AM_DEFAULT_V@)
am__v_P_0 = false
@@ -206,7 +172,7 @@ AM_V_at = $(am__v_at_@AM_V@)
am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
am__v_at_0 = @
am__v_at_1 =
-DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
+DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src/include
depcomp = $(SHELL) $(top_srcdir)/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
@@ -434,7 +400,7 @@ top_builddir = @top_builddir@
top_srcdir = @top_srcdir@
SUBDIRS = .
BUILD_LIBS = ../slalib/libsla.la ../libcf/libcf.la $(cfitsio_LIBS)
-BUILD_FLAGS = -I../../include -I./ $(cfitsio_CFLAGS)
+BUILD_FLAGS = -I../include -I./ $(cfitsio_CFLAGS)
cf_assign_wavelength_SOURCES = cf_assign_wavelength.c
cf_bad_pixels_SOURCES = cf_bad_pixels.c
cf_convert_to_farf_SOURCES = cf_convert_to_farf.c
@@ -446,28 +412,8 @@ cf_hist_init_SOURCES = cf_hist_init.c
cf_remove_motions_SOURCES = cf_remove_motions.c
cf_screen_photons_SOURCES = cf_screen_photons.c
cf_ttag_init_SOURCES = cf_ttag_init.c
-cf_assign_wavelength_LDADD = $(BUILD_LIBS)
-cf_bad_pixels_LDADD = $(BUILD_LIBS)
-cf_convert_to_farf_LDADD = $(BUILD_LIBS)
-cf_countmap_LDADD = $(BUILD_LIBS)
-cf_extract_spectra_LDADD = $(BUILD_LIBS)
-cf_flux_calibrate_LDADD = $(BUILD_LIBS)
-cf_gainmap_LDADD = $(BUILD_LIBS)
-cf_hist_init_LDADD = $(BUILD_LIBS)
-cf_remove_motions_LDADD = $(BUILD_LIBS)
-cf_screen_photons_LDADD = $(BUILD_LIBS)
-cf_ttag_init_LDADD = $(BUILD_LIBS)
-cf_assign_wavelength_CFLAGS = $(BUILD_FLAGS)
-cf_bad_pixels_CFLAGS = $(BUILD_FLAGS)
-cf_convert_to_farf_CFLAGS = $(BUILD_FLAGS)
-cf_countmap_CFLAGS = $(BUILD_FLAGS)
-cf_extract_spectra_CFLAGS = $(BUILD_FLAGS)
-cf_flux_calibrate_CFLAGS = $(BUILD_FLAGS)
-cf_gainmap_CFLAGS = $(BUILD_FLAGS)
-cf_hist_init_CFLAGS = $(BUILD_FLAGS)
-cf_remove_motions_CFLAGS = $(BUILD_FLAGS)
-cf_screen_photons_CFLAGS = $(BUILD_FLAGS)
-cf_ttag_init_CFLAGS = $(BUILD_FLAGS)
+LDADD = $(BUILD_LIBS)
+AM_CFLAGS = $(BUILD_FLAGS)
all: all-recursive
.SUFFIXES:
@@ -553,47 +499,47 @@ clean-binPROGRAMS:
cf_assign_wavelength$(EXEEXT): $(cf_assign_wavelength_OBJECTS) $(cf_assign_wavelength_DEPENDENCIES) $(EXTRA_cf_assign_wavelength_DEPENDENCIES)
@rm -f cf_assign_wavelength$(EXEEXT)
- $(AM_V_CCLD)$(cf_assign_wavelength_LINK) $(cf_assign_wavelength_OBJECTS) $(cf_assign_wavelength_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_assign_wavelength_OBJECTS) $(cf_assign_wavelength_LDADD) $(LIBS)
cf_bad_pixels$(EXEEXT): $(cf_bad_pixels_OBJECTS) $(cf_bad_pixels_DEPENDENCIES) $(EXTRA_cf_bad_pixels_DEPENDENCIES)
@rm -f cf_bad_pixels$(EXEEXT)
- $(AM_V_CCLD)$(cf_bad_pixels_LINK) $(cf_bad_pixels_OBJECTS) $(cf_bad_pixels_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_bad_pixels_OBJECTS) $(cf_bad_pixels_LDADD) $(LIBS)
cf_convert_to_farf$(EXEEXT): $(cf_convert_to_farf_OBJECTS) $(cf_convert_to_farf_DEPENDENCIES) $(EXTRA_cf_convert_to_farf_DEPENDENCIES)
@rm -f cf_convert_to_farf$(EXEEXT)
- $(AM_V_CCLD)$(cf_convert_to_farf_LINK) $(cf_convert_to_farf_OBJECTS) $(cf_convert_to_farf_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_convert_to_farf_OBJECTS) $(cf_convert_to_farf_LDADD) $(LIBS)
cf_countmap$(EXEEXT): $(cf_countmap_OBJECTS) $(cf_countmap_DEPENDENCIES) $(EXTRA_cf_countmap_DEPENDENCIES)
@rm -f cf_countmap$(EXEEXT)
- $(AM_V_CCLD)$(cf_countmap_LINK) $(cf_countmap_OBJECTS) $(cf_countmap_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_countmap_OBJECTS) $(cf_countmap_LDADD) $(LIBS)
cf_extract_spectra$(EXEEXT): $(cf_extract_spectra_OBJECTS) $(cf_extract_spectra_DEPENDENCIES) $(EXTRA_cf_extract_spectra_DEPENDENCIES)
@rm -f cf_extract_spectra$(EXEEXT)
- $(AM_V_CCLD)$(cf_extract_spectra_LINK) $(cf_extract_spectra_OBJECTS) $(cf_extract_spectra_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_extract_spectra_OBJECTS) $(cf_extract_spectra_LDADD) $(LIBS)
cf_flux_calibrate$(EXEEXT): $(cf_flux_calibrate_OBJECTS) $(cf_flux_calibrate_DEPENDENCIES) $(EXTRA_cf_flux_calibrate_DEPENDENCIES)
@rm -f cf_flux_calibrate$(EXEEXT)
- $(AM_V_CCLD)$(cf_flux_calibrate_LINK) $(cf_flux_calibrate_OBJECTS) $(cf_flux_calibrate_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_flux_calibrate_OBJECTS) $(cf_flux_calibrate_LDADD) $(LIBS)
cf_gainmap$(EXEEXT): $(cf_gainmap_OBJECTS) $(cf_gainmap_DEPENDENCIES) $(EXTRA_cf_gainmap_DEPENDENCIES)
@rm -f cf_gainmap$(EXEEXT)
- $(AM_V_CCLD)$(cf_gainmap_LINK) $(cf_gainmap_OBJECTS) $(cf_gainmap_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_gainmap_OBJECTS) $(cf_gainmap_LDADD) $(LIBS)
cf_hist_init$(EXEEXT): $(cf_hist_init_OBJECTS) $(cf_hist_init_DEPENDENCIES) $(EXTRA_cf_hist_init_DEPENDENCIES)
@rm -f cf_hist_init$(EXEEXT)
- $(AM_V_CCLD)$(cf_hist_init_LINK) $(cf_hist_init_OBJECTS) $(cf_hist_init_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_hist_init_OBJECTS) $(cf_hist_init_LDADD) $(LIBS)
cf_remove_motions$(EXEEXT): $(cf_remove_motions_OBJECTS) $(cf_remove_motions_DEPENDENCIES) $(EXTRA_cf_remove_motions_DEPENDENCIES)
@rm -f cf_remove_motions$(EXEEXT)
- $(AM_V_CCLD)$(cf_remove_motions_LINK) $(cf_remove_motions_OBJECTS) $(cf_remove_motions_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_remove_motions_OBJECTS) $(cf_remove_motions_LDADD) $(LIBS)
cf_screen_photons$(EXEEXT): $(cf_screen_photons_OBJECTS) $(cf_screen_photons_DEPENDENCIES) $(EXTRA_cf_screen_photons_DEPENDENCIES)
@rm -f cf_screen_photons$(EXEEXT)
- $(AM_V_CCLD)$(cf_screen_photons_LINK) $(cf_screen_photons_OBJECTS) $(cf_screen_photons_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_screen_photons_OBJECTS) $(cf_screen_photons_LDADD) $(LIBS)
cf_ttag_init$(EXEEXT): $(cf_ttag_init_OBJECTS) $(cf_ttag_init_DEPENDENCIES) $(EXTRA_cf_ttag_init_DEPENDENCIES)
@rm -f cf_ttag_init$(EXEEXT)
- $(AM_V_CCLD)$(cf_ttag_init_LINK) $(cf_ttag_init_OBJECTS) $(cf_ttag_init_LDADD) $(LIBS)
+ $(AM_V_CCLD)$(LINK) $(cf_ttag_init_OBJECTS) $(cf_ttag_init_LDADD) $(LIBS)
mostlyclean-compile:
-rm -f *.$(OBJEXT)
@@ -601,17 +547,17 @@ mostlyclean-compile:
distclean-compile:
-rm -f *.tab.c
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_assign_wavelength-cf_assign_wavelength.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_bad_pixels-cf_bad_pixels.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_convert_to_farf-cf_convert_to_farf.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_countmap-cf_countmap.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_extract_spectra-cf_extract_spectra.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_flux_calibrate-cf_flux_calibrate.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_gainmap-cf_gainmap.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_hist_init-cf_hist_init.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_remove_motions-cf_remove_motions.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_screen_photons-cf_screen_photons.Po@am__quote@
-@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_ttag_init-cf_ttag_init.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_assign_wavelength.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_bad_pixels.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_convert_to_farf.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_countmap.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_extract_spectra.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_flux_calibrate.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_gainmap.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_hist_init.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_remove_motions.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_screen_photons.Po@am__quote@
+@AMDEP_TRUE@@am__include@ @am__quote@./$(DEPDIR)/cf_ttag_init.Po@am__quote@
.c.o:
@am__fastdepCC_TRUE@ $(AM_V_CC)$(COMPILE) -MT $@ -MD -MP -MF $(DEPDIR)/$*.Tpo -c -o $@ $<
@@ -634,160 +580,6 @@ distclean-compile:
@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(LTCOMPILE) -c -o $@ $<
-cf_assign_wavelength-cf_assign_wavelength.o: cf_assign_wavelength.c
-@am__fastdepCC_TRUE@ $(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_assign_wavelength_CFLAGS) $(CFLAGS) -MT cf_assign_wavelength-cf_assign_wavelength.o -MD -MP -MF $(DEPDIR)/cf_assign_wavelength-cf_assign_wavelength.Tpo -c -o cf_assign_wavelength-cf_assign_wavelength.o `test -f 'cf_assign_wavelength.c' || echo '$(srcdir)/'`cf_assign_wavelength.c
-@am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/cf_assign_wavelength-cf_assign_wavelength.Tpo $(DEPDIR)/cf_assign_wavelength-cf_assign_wavelength.Po
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='cf_assign_wavelength.c' object='cf_assign_wavelength-cf_assign_wavelength.o' libtool=no @AMDEPBACKSLASH@
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_assign_wavelength_CFLAGS) $(CFLAGS) -c -o cf_assign_wavelength-cf_assign_wavelength.o `test -f 'cf_assign_wavelength.c' || echo '$(srcdir)/'`cf_assign_wavelength.c
-
-cf_assign_wavelength-cf_assign_wavelength.obj: cf_assign_wavelength.c
-@am__fastdepCC_TRUE@ $(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_assign_wavelength_CFLAGS) $(CFLAGS) -MT cf_assign_wavelength-cf_assign_wavelength.obj -MD -MP -MF $(DEPDIR)/cf_assign_wavelength-cf_assign_wavelength.Tpo -c -o cf_assign_wavelength-cf_assign_wavelength.obj `if test -f 'cf_assign_wavelength.c'; then $(CYGPATH_W) 'cf_assign_wavelength.c'; else $(CYGPATH_W) '$(srcdir)/cf_assign_wavelength.c'; fi`
-@am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/cf_assign_wavelength-cf_assign_wavelength.Tpo $(DEPDIR)/cf_assign_wavelength-cf_assign_wavelength.Po
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='cf_assign_wavelength.c' object='cf_assign_wavelength-cf_assign_wavelength.obj' libtool=no @AMDEPBACKSLASH@
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_assign_wavelength_CFLAGS) $(CFLAGS) -c -o cf_assign_wavelength-cf_assign_wavelength.obj `if test -f 'cf_assign_wavelength.c'; then $(CYGPATH_W) 'cf_assign_wavelength.c'; else $(CYGPATH_W) '$(srcdir)/cf_assign_wavelength.c'; fi`
-
-cf_bad_pixels-cf_bad_pixels.o: cf_bad_pixels.c
-@am__fastdepCC_TRUE@ $(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_bad_pixels_CFLAGS) $(CFLAGS) -MT cf_bad_pixels-cf_bad_pixels.o -MD -MP -MF $(DEPDIR)/cf_bad_pixels-cf_bad_pixels.Tpo -c -o cf_bad_pixels-cf_bad_pixels.o `test -f 'cf_bad_pixels.c' || echo '$(srcdir)/'`cf_bad_pixels.c
-@am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/cf_bad_pixels-cf_bad_pixels.Tpo $(DEPDIR)/cf_bad_pixels-cf_bad_pixels.Po
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='cf_bad_pixels.c' object='cf_bad_pixels-cf_bad_pixels.o' libtool=no @AMDEPBACKSLASH@
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_bad_pixels_CFLAGS) $(CFLAGS) -c -o cf_bad_pixels-cf_bad_pixels.o `test -f 'cf_bad_pixels.c' || echo '$(srcdir)/'`cf_bad_pixels.c
-
-cf_bad_pixels-cf_bad_pixels.obj: cf_bad_pixels.c
-@am__fastdepCC_TRUE@ $(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_bad_pixels_CFLAGS) $(CFLAGS) -MT cf_bad_pixels-cf_bad_pixels.obj -MD -MP -MF $(DEPDIR)/cf_bad_pixels-cf_bad_pixels.Tpo -c -o cf_bad_pixels-cf_bad_pixels.obj `if test -f 'cf_bad_pixels.c'; then $(CYGPATH_W) 'cf_bad_pixels.c'; else $(CYGPATH_W) '$(srcdir)/cf_bad_pixels.c'; fi`
-@am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/cf_bad_pixels-cf_bad_pixels.Tpo $(DEPDIR)/cf_bad_pixels-cf_bad_pixels.Po
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='cf_bad_pixels.c' object='cf_bad_pixels-cf_bad_pixels.obj' libtool=no @AMDEPBACKSLASH@
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_bad_pixels_CFLAGS) $(CFLAGS) -c -o cf_bad_pixels-cf_bad_pixels.obj `if test -f 'cf_bad_pixels.c'; then $(CYGPATH_W) 'cf_bad_pixels.c'; else $(CYGPATH_W) '$(srcdir)/cf_bad_pixels.c'; fi`
-
-cf_convert_to_farf-cf_convert_to_farf.o: cf_convert_to_farf.c
-@am__fastdepCC_TRUE@ $(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_convert_to_farf_CFLAGS) $(CFLAGS) -MT cf_convert_to_farf-cf_convert_to_farf.o -MD -MP -MF $(DEPDIR)/cf_convert_to_farf-cf_convert_to_farf.Tpo -c -o cf_convert_to_farf-cf_convert_to_farf.o `test -f 'cf_convert_to_farf.c' || echo '$(srcdir)/'`cf_convert_to_farf.c
-@am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/cf_convert_to_farf-cf_convert_to_farf.Tpo $(DEPDIR)/cf_convert_to_farf-cf_convert_to_farf.Po
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='cf_convert_to_farf.c' object='cf_convert_to_farf-cf_convert_to_farf.o' libtool=no @AMDEPBACKSLASH@
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_convert_to_farf_CFLAGS) $(CFLAGS) -c -o cf_convert_to_farf-cf_convert_to_farf.o `test -f 'cf_convert_to_farf.c' || echo '$(srcdir)/'`cf_convert_to_farf.c
-
-cf_convert_to_farf-cf_convert_to_farf.obj: cf_convert_to_farf.c
-@am__fastdepCC_TRUE@ $(AM_V_CC)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_convert_to_farf_CFLAGS) $(CFLAGS) -MT cf_convert_to_farf-cf_convert_to_farf.obj -MD -MP -MF $(DEPDIR)/cf_convert_to_farf-cf_convert_to_farf.Tpo -c -o cf_convert_to_farf-cf_convert_to_farf.obj `if test -f 'cf_convert_to_farf.c'; then $(CYGPATH_W) 'cf_convert_to_farf.c'; else $(CYGPATH_W) '$(srcdir)/cf_convert_to_farf.c'; fi`
-@am__fastdepCC_TRUE@ $(AM_V_at)$(am__mv) $(DEPDIR)/cf_convert_to_farf-cf_convert_to_farf.Tpo $(DEPDIR)/cf_convert_to_farf-cf_convert_to_farf.Po
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ $(AM_V_CC)source='cf_convert_to_farf.c' object='cf_convert_to_farf-cf_convert_to_farf.obj' libtool=no @AMDEPBACKSLASH@
-@AMDEP_TRUE@@am__fastdepCC_FALSE@ DEPDIR=$(DEPDIR) $(CCDEPMODE) $(depcomp) @AMDEPBACKSLASH@
-@am__fastdepCC_FALSE@ $(AM_V_CC@am__nodep@)$(CC) $(DEFS) $(DEFAULT_INCLUDES) $(INCLUDES) $(AM_CPPFLAGS) $(CPPFLAGS) $(cf_convert_to_farf_CFLAGS) $(CFLAGS) -c -o cf_convert_to_farf-cf_convert_to_farf.obj `if test -f 'cf_convert_to_farf.c'; then $(CYGPATH_W) 'cf_convert_to_farf.c'; else $(CYGPATH_W) '$(srcdir)/cf_convert_to_farf.c'; fi`
-
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-
mostlyclean-libtool:
-rm -f *.lo
diff --git a/src/libcf/Makefile.am b/src/libcf/Makefile.am
index 5d45f30..d59fc62 100644
--- a/src/libcf/Makefile.am
+++ b/src/libcf/Makefile.am
@@ -32,6 +32,7 @@ libcf_la_SOURCES = \
cf_init_support.c cf_modify_hist_pha.c \
cf_fes_proc_check.c cf_fes_proc_update.c
libcf_la_LDFLAGS = -lm -lgfortran
-libcf_la_CFLAGS = $(cfitsio_CFLAGS) -I../include -I./ -I../../include
+libcf_la_CFLAGS = $(cfitsio_CFLAGS)
libcf_la_LIBADD = $(cfitsio_LIBS)
+AM_CFLAGS = -I$(top_srcdir)/include
diff --git a/src/libcf/Makefile.in b/src/libcf/Makefile.in
index 2b20728..c04b91d 100644
--- a/src/libcf/Makefile.in
+++ b/src/libcf/Makefile.in
@@ -98,7 +98,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_HEADER = $(top_builddir)/src/include/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
@@ -200,7 +200,7 @@ AM_V_at = $(am__v_at_@AM_V@)
am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
am__v_at_0 = @
am__v_at_1 =
-DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
+DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src/include
depcomp = $(SHELL) $(top_srcdir)/depcomp
am__depfiles_maybe = depfiles
am__mv = mv -f
@@ -409,8 +409,9 @@ libcf_la_SOURCES = \
cf_fes_proc_check.c cf_fes_proc_update.c
libcf_la_LDFLAGS = -lm -lgfortran
-libcf_la_CFLAGS = $(cfitsio_CFLAGS) -I../include -I./ -I../../include
+libcf_la_CFLAGS = $(cfitsio_CFLAGS)
libcf_la_LIBADD = $(cfitsio_LIBS)
+AM_CFLAGS = -I$(top_srcdir)/include
all: all-am
.SUFFIXES:
diff --git a/src/slalib/Makefile.am b/src/slalib/Makefile.am
index 895eea9..7b5f1e1 100644
--- a/src/slalib/Makefile.am
+++ b/src/slalib/Makefile.am
@@ -184,4 +184,4 @@ libsla_la_SOURCES = \
xy2xy.f \
zd.f
-AM_CFLAGS = -I../include -I./
+AM_CFLAGS = -I$(top_srcdir)/include -I./
diff --git a/src/slalib/Makefile.in b/src/slalib/Makefile.in
index 643c07f..c175c19 100644
--- a/src/slalib/Makefile.in
+++ b/src/slalib/Makefile.in
@@ -98,7 +98,7 @@ am__configure_deps = $(am__aclocal_m4_deps) $(CONFIGURE_DEPENDENCIES) \
$(ACLOCAL_M4)
DIST_COMMON = $(srcdir)/Makefile.am $(am__DIST_COMMON)
mkinstalldirs = $(install_sh) -d
-CONFIG_HEADER = $(top_builddir)/config.h
+CONFIG_HEADER = $(top_builddir)/src/include/config.h
CONFIG_CLEAN_FILES =
CONFIG_CLEAN_VPATH_FILES =
am__vpath_adj_setup = srcdirstrip=`echo "$(srcdir)" | sed 's|.|.|g'`;
@@ -175,7 +175,7 @@ AM_V_at = $(am__v_at_@AM_V@)
am__v_at_ = $(am__v_at_@AM_DEFAULT_V@)
am__v_at_0 = @
am__v_at_1 =
-DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)
+DEFAULT_INCLUDES = -I.@am__isrc@ -I$(top_builddir)/src/include
F77COMPILE = $(F77) $(AM_FFLAGS) $(FFLAGS)
LTF77COMPILE = $(LIBTOOL) $(AM_V_lt) --tag=F77 $(AM_LIBTOOLFLAGS) \
$(LIBTOOLFLAGS) --mode=compile $(F77) $(AM_FFLAGS) $(FFLAGS)
@@ -529,7 +529,7 @@ libsla_la_SOURCES = \
xy2xy.f \
zd.f
-AM_CFLAGS = -I../include -I./
+AM_CFLAGS = -I$(top_srcdir)/include -I./
all: all-am
.SUFFIXES:
generated by cgit (git 2.34.1) at 2025-09-20 06:32:58 -0400