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#!/usr/local/bin/tcsh -f
#******************************************************************************
#* Johns Hopkins University
#* Center For Astrophysical Sciences
#* FUSE
#******************************************************************************
#*
#* Synopsis: calfuse.csh file_name
#*
#* Description: Shell script for processing FUSE Ver 3.0 time-tagged exposures.
#* All messages are written to stdout or stderr.
#*
#* Arguments: char file_name File name to process is 1st command-
#* line argument
#*
#* Returns: Exit codes:
#* 0 Successful execution
#*
#*
#* Environment variables: CF_CALDIR Path to directory which contains the
#* calibration files.
#* CF_IDLDIR Path to CalFUSE IDL directory
#* CF_PIPELINE Flag to determine if CALFUSE
#* is running as part of the JHU
#* pipeline.
#*
#* History: 02/26/03 1.1 peb Begin work on V3.0
#* 03/19/03 1.2 wvd Add IDL plots
#* 03/31/03 1.3 peb Add cf_ttag_countmap/gainmap programs
#* and changed the timestamp format to be
#* similar to cf_timestamp
#* 05/16/03 1.4 wvd Distinguish between TTAG and HIST files.
#* Changed name to calfuse.csh
#* 05/22/03 1.5 wvd Direct STDERR to trailer file.
#* 06/03/03 1.6 rdr Incorporated bad pixel map
#* 06/09/03 1.7 rdr Do not screen on timing flags for HIST
#* data processed behind the firewall
#* 07/31/03 1.8 wvd Check error status before exiting.
#* 09/15/03 1.9 wvd Write BEGIN and END stmts to logfile.
#* 12/08/03 1.10 wvd For HIST data, always call
#* cf_extract_spectra and cf_bad_pixels
#* with -s option.
#* 12/21/03 1.13 wvd Remove underscore from idf and bpm
#* filenames.
#* 04/22/04 1.12 wvd Change name of trailer file to
#* {$froot}.trl
#* 05/12/04 1.13 wvd Remove cf_ttag_countmap and
#* cf_ttag_gainmap from pipeline.
#* 06/01/04 1.14 wvd For HIST data, no longer need to call
#* cf_extract_spectra with -s option.
#* 06/03/04 1.15 wvd Screening step now follows "Convert
#* to FARF."
#*
#*****************************************************************************/
# Delete files after processing? (Default is no.)
#set DELETE_IDF # Delete intermediate data file
#set DELETE_BPM # Delete bad-pixel map
set idf = ${1:s/raw/idf/}
set froot = ${1:s/raw.fit//}
set logfile = {$froot}.trl
set ttag = `echo $froot | grep -c ttag`
# Put a timestamp in the log file (the OPUS trailer file).
if $ttag then
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin TTAG file $1"
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin TTAG file $1" >>& $logfile
else
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin HIST file $1"
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Begin HIST file $1" >>& $logfile
endif
set cfstat=0
# Step 1 -- Generate Intermediate Data File
if $ttag then
cf_ttag_init $1 $idf >>& $logfile
set cfstat=$status
else
cf_hist_init $1 $idf >>& $logfile
set cfstat=$status
endif
# Step 2 -- Convert to FARF
if ! $cfstat then
cf_convert_to_farf $idf >>& $logfile
set cfstat=$status
endif
# Step 3 -- Screen photons
if ! $cfstat then
cf_screen_photons $idf >>& $logfile
set cfstat=$status
endif
# Step 4 -- Remove motions
if ! $cfstat then
cf_remove_motions $idf >>& $logfile
set cfstat=$status
endif
if ! $cfstat then
if ($?CF_IDLDIR) then
idlplot_rate.pl {$froot} >>& $logfile
idlplot_spex.pl {$froot} >>& $logfile
endif
endif
# Step 5 -- Assign wavelength
if ! $cfstat then
cf_assign_wavelength $idf >>& $logfile
set cfstat=$status
endif
# Step 6 -- Flux calibrate
if ! $cfstat then
cf_flux_calibrate $idf >>& $logfile
set cfstat=$status
endif
# Step 7 -- Create a bad-pixel file
if ! $cfstat then
cf_bad_pixels $idf >>& $logfile
set cfstat=$status
endif
# Step 8 -- Extract spectra
if ! $cfstat then
cf_extract_spectra $idf >>& $logfile
set cfstat=$status
endif
# Step 8a -- Delete _bursts.dat file
if ! $?CF_PIPELINE then
rm -f ${1:r:s/ttagfraw/_bursts/}.dat
endif
# Step 8b -- Delete IDF file
if $?DELETE_IDF then
echo "NOTE: Deleting intermediate data file."
rm $idf
endif
# Step 8c -- Delete bad pixel map (bpm) file
if $?DELETE_BPM then
echo "NOTE: Deleting bad pixel map (bpm) file."
rm -f ${1:s/raw/bpm/}
endif
if ! $cfstat then
if $ttag then
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End TTAG file $1"
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End TTAG file $1" >>& $logfile
else
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End HIST file $1"
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: End HIST file $1" >>& $logfile
endif
else
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Error processing $1"
echo `date '+%Y %b %e %T'` "calfuse.csh-1.15: Error processing $1" >>& $logfile
endif
exit($cfstat)
#******************************************************************************
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