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|
#!/bin/sh
#******************************************************************************
#* Johns Hopkins University
#* Center For Astrophysical Sciences
#* FUSE
#******************************************************************************
#*
#* Synopsis: calfuse.sh file_name
#*
#* Description: Shell script for processing FUSE Ver 3.2 time-tagged exposures.
#* All messages are written to stdout or stderr.
#*
#* Arguments: char file_name File name to process is 1st command-
#* line argument
#*
#* Returns: Exit codes:
#* 0 Successful execution
#*
#*
#* Environment variables: CF_CALDIR Path to directory which contains the
#* calibration files.
#* CF_IDLDIR Path to CalFUSE IDL directory
#* CF_PIPELINE Flag to determine if CALFUSE
#* is running as part of the JHU
#* pipeline.
#*
#* History: 09/05/07 1.1 bot Adapted from tcsh script
#*
#*****************************************************************************/
# Delete files after processing? (Default is no.)
#DELETE_IDF=1 # Delete intermediate data file
#DELETE_BPM=1 # Delete bad-pixel map
idf=`echo $1 | sed -e "s/raw/idf/g"`
froot=`echo $1 | sed -e "s/raw.fit//g"`
logfile=${froot}.trl
ttag=`echo $froot | grep -c ttag`
# Put a timestamp in the log file (the OPUS trailer file).
if [ $ttag = 1 ]; then
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: Begin TTAG file $1"
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: Begin TTAG file $1" >> $logfile 2>&1
else
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: Begin HIST file $1"
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: Begin HIST file $1" >> $logfile 2>&1
fi
cfstat=1
# Step 1 -- Generate Intermediate Data File
if [ $ttag = 1 ]; then
cf_ttag_init $1 $idf >> $logfile 2>&1
cfstat=$?
else
cf_hist_init $1 $idf >> $logfile 2>&1
cfstat=$?
fi
# Step 2 -- Convert to FARF
if [ $cfstat = 0 ]; then
cf_convert_to_farf $idf >> $logfile 2>&1
cfstat=$?
fi
# Step 3 -- Screen photons
if [ $cfstat = 0 ]; then
cf_screen_photons $idf >> $logfile 2>&1
cfstat=$?
fi
# Step 4 -- Remove motions
if [ $cfstat = 0 ]; then
cf_remove_motions $idf >> $logfile 2>&1
cfstat=$?
fi
if [ $cfstat = 0 ]; then
if [ ${CF_IDLDIR:-""} != "" ]; then
idlplot_rate.pl $froot >> $logfile 2>&1
idlplot_spex.pl $froot >> $logfile 2>&1
fi
fi
# Step 5 -- Assign wavelength
if [ $cfstat = 0 ]; then
cf_assign_wavelength $idf >> $logfile 2>&1
cfstat=$?
fi
# Step 6 -- Flux calibrate
if [ $cfstat = 0 ]; then
cf_flux_calibrate $idf >> $logfile 2>&1
cfstat=$?
fi
# Step 7 -- Create a bad-pixel file
if [ $cfstat = 0 ]; then
cf_bad_pixels $idf >> $logfile 2>&1
cfstat=$?
fi
# Step 8 -- Extract spectra
if [ $cfstat = 0 ]; then
cf_extract_spectra $idf >> $logfile 2>&1
cfstat=$?
fi
# Step 8a -- Delete _bursts.dat file
if [ ${CF_PIPELINE:-""} = "" ]; then
rm -f `echo $1 | sed -e "s/ttagfraw.fit/_bursts.dat/g"`
fi
# Step 8b -- Delete IDF file
if [ ${DELETE_IDF:-""} != "" ]; then
echo "NOTE: Deleting intermediate data file."
rm -f $idf
fi
# Step 8c -- Delete bad pixel map (bpm) file
if [ ${DELETE_BPM:-""} != "" ]; then
echo "NOTE: Deleting bad pixel map (bpm) file."
rm -f `echo $1 | sed -e "s/raw/bpm/g"`
fi
if [ $cfstat = 0 ]; then
if [ $ttag = 1 ]; then
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: End TTAG file $1"
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: End TTAG file $1" >> $logfile 2>&1
else
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: End HIST file $1"
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: End HIST file $1" >> $logfile 2>&1
fi
else
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: Error processing $1"
echo `date '+%Y %b %e %T'` "calfuse.sh-1.15: Error processing $1" >> $logfile 2>&1
fi
exit $cfstat
#******************************************************************************
|
