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+# APALL
+
+input,s,a,,,,List of input images
+output,s,h,"",,,List of output spectra
+apertures,s,h,"",,,Apertures
+format,s,h,"multispec","onedspec|multispec|echelle|strip",,Extracted spectra format
+references,s,h,"",,,List of aperture reference images
+profiles,s,h,"",,,"List of aperture profile images
+"
+interactive,b,h,yes,,,Run task interactively?
+find,b,h,yes,,,Find apertures?
+recenter,b,h,yes,,,Recenter apertures?
+resize,b,h,yes,,,Resize apertures?
+edit,b,h,yes,,,Edit apertures?
+trace,b,h,yes,,,Trace apertures?
+fittrace,b,h,yes,,,Fit the traced points interactively?
+extract,b,h,yes,,,Extract spectra?
+extras,b,h,yes,,,"Extract sky, sigma, etc.?"
+review,b,h,yes,,,"Review extractions?
+"
+line,i,h,INDEF,1,,Dispersion line
+nsum,i,h,10,,,"Number of dispersion lines to sum or median
+
+# DEFAULT APERTURE PARAMETERS
+"
+lower,r,h,-5,,,Lower aperture limit relative to center
+upper,r,h,5,,,Upper aperture limit relative to center
+apidtable,s,h,"",,,"Aperture ID table (optional)
+
+# DEFAULT BACKGROUND PARAMETERS
+"
+b_function,s,h,"chebyshev","chebyshev|legendre|spline1|spline3",,Background function
+b_order,i,h,1,1,,Background function order
+b_sample,s,h,"-10:-6,6:10",,,Background sample regions
+b_naverage,i,h,-3,,,Background average or median
+b_niterate,i,h,0,0,,Background rejection iterations
+b_low_reject,r,h,3.,0.,,Background lower rejection sigma
+b_high_reject,r,h,3.,0.,,Background upper rejection sigma
+b_grow,r,h,0.,0.,,"Background rejection growing radius
+
+# APERTURE CENTERING PARAMETERS
+"
+width,r,h,5.,0.,,Profile centering width
+radius,r,h,10.,,,Profile centering radius
+threshold,r,h,0.,0.,,"Detection threshold for profile centering
+
+# AUTOMATIC FINDING AND ORDERING PARAMETERS
+"
+nfind,i,q,,,,Number of apertures to be found automatically
+minsep,r,h,5.,1.,,Minimum separation between spectra
+maxsep,r,h,100000.,1.,,Maximum separation between spectra
+order,s,h,"increasing","increasing|decreasing",,"Order of apertures
+
+# RECENTERING PARAMETERS
+"
+aprecenter,s,h,"",,,Apertures for recentering calculation
+npeaks,r,h,INDEF,0.,,Select brightest peaks
+shift,b,h,yes,,,"Use average shift instead of recentering?
+
+# RESIZING PARAMETERS
+"
+llimit,r,h,INDEF,,,Lower aperture limit relative to center
+ulimit,r,h,INDEF,,,Upper aperture limit relative to center
+ylevel,r,h,0.1,,,Fraction of peak or intensity for automatic width
+peak,b,h,yes,,,Is ylevel a fraction of the peak?
+bkg,b,h,yes,,,"Subtract background in automatic width?"
+r_grow,r,h,0.,,,"Grow limits by this factor"
+avglimits,b,h,no,,,"Average limits over all apertures?
+
+# TRACING PARAMETERS
+"
+t_nsum,i,h,10,1,,Number of dispersion lines to sum
+t_step,i,h,10,1,,Tracing step
+t_nlost,i,h,3,1,,Number of consecutive times profile is lost before quitting
+t_function,s,h,"legendre","chebyshev|legendre|spline1|spline3",,Trace fitting function
+t_order,i,h,2,1,,Trace fitting function order
+t_sample,s,h,"*",,,Trace sample regions
+t_naverage,i,h,1,,,Trace average or median
+t_niterate,i,h,0,0,,Trace rejection iterations
+t_low_reject,r,h,3.,0.,,Trace lower rejection sigma
+t_high_reject,r,h,3.,0.,,Trace upper rejection sigma
+t_grow,r,h,0.,0.,,"Trace rejection growing radius
+
+# EXTRACTION PARAMETERS
+"
+background,s,h,"none","none|average|median|minimum|fit",,Background to subtract
+skybox,i,h,1,1,,Box car smoothing length for sky
+weights,s,h,"none","none|variance",,Extraction weights (none|variance)
+pfit,s,h,"fit1d","fit1d|fit2d",,Profile fitting type (fit1d|fit2d)
+clean,b,h,no,,,Detect and replace bad pixels?
+saturation,r,h,INDEF,1.,,Saturation level
+readnoise,s,h,"0.",,,Read out noise sigma (photons)
+gain,s,h,"1.",,,Photon gain (photons/data number)
+lsigma,r,h,4,0,,Lower rejection threshold
+usigma,r,h,4,0,,Upper rejection threshold
+nsubaps,i,h,1,1,,Number of subapertures per aperture