Initial commit

1 files changed, 250 insertions, 0 deletions

diff --git a/pkg/images/immatch/src/xregister/xregister.h b/pkg/images/immatch/src/xregister/xregister.h
new file mode 100644
index 00000000..16c88b1e
--- /dev/null
+++ b/pkg/images/immatch/src/xregister/xregister.h
@@ -0,0 +1,250 @@
+# Header file for XREGISTER
+
+# Define the cross correlation structure
+
+define	LEN_XCSTRUCT	(50 + 12 * SZ_FNAME + 12)
+
+define	XC_RC1		Memi[$1]	 # pointers to 1st column of ref regions
+define	XC_RC2		Memi[$1+1]	 # pointers to 2nd column of ref regions
+define	XC_RL1		Memi[$1+2]	 # pointers to 1st line of ref regions
+define	XC_RL2		Memi[$1+3]	 # pointers to 2nd line of ref regions
+define	XC_RZERO	Memi[$1+4]	 # pointers to zero pts of ref regions
+define	XC_RXSLOPE	Memi[$1+5]	 # pointers to x slopes of ref regions
+define	XC_RYSLOPE	Memi[$1+6]	 # pointers to y slopes of ref regions
+define	XC_XSHIFTS	Memi[$1+7]	 # pointers to x shifts of ref regions
+define	XC_YSHIFTS	Memi[$1+8]	 # pointers to y shifts of ref regions
+define	XC_NREGIONS	Memi[$1+9]	 # total number of regions
+define	XC_CREGION	Memi[$1+10]	 # the current region
+
+define	XC_NREFPTS	Memi[$1+11]	 # number of reference points
+define	XC_XREF		Memi[$1+12]	 # pointer to x reference points
+define	XC_YREF		Memi[$1+13]	 # pointer to y reference points
+define	XC_TRANSFORM	Memi[$1+14]	 # pointer to the transform
+define	XC_IXLAG	Memi[$1+15]	 # initial shift in x
+define	XC_IYLAG	Memi[$1+16]	 # initial shift in y
+define	XC_XLAG		Memi[$1+17]	 # current shift in x
+define	XC_YLAG		Memi[$1+18]	 # current shift in y
+define	XC_DXLAG	Memi[$1+19]	 # incremental shift in x
+define	XC_DYLAG	Memi[$1+20]	 # incremental shift in y
+
+define	XC_BACKGRD	Memi[$1+21]	 # type of background subtraction
+define	XC_BORDER	Memi[$1+22]	 # width of background border
+define	XC_BVALUER	Memr[P2R($1+23)] # reference background value
+define	XC_BVALUE	Memr[P2R($1+24)] # image bacground value
+define	XC_LOREJECT	Memr[P2R($1+25)] # low side rejection
+define	XC_HIREJECT	Memr[P2R($1+26)] # high side rejection
+define	XC_APODIZE	Memr[P2R($1+27)] # fraction of apodized region
+define	XC_FILTER	Memi[$1+28]	 # filter type
+
+define	XC_CFUNC	Memi[$1+30]	 # crosscor function
+define	XC_XWINDOW	Memi[$1+31]	 # width of correlation window in x
+define	XC_YWINDOW	Memi[$1+32]	 # width of correlation window in y
+define	XC_XCOR		Memi[$1+33]	 # pointer to cross-correlation function
+
+define	XC_PFUNC	Memi[$1+34]	 # correlation peak fitting function
+define	XC_XCBOX	Memi[$1+35]	 # x width of cor fitting box
+define	XC_YCBOX	Memi[$1+36]	 # y width of cor fitting box
+
+define	XC_TXSHIFT	Memr[P2R($1+37)] # total x shift
+define	XC_TYSHIFT	Memr[P2R($1+38)] # total y shift
+
+define	XC_BSTRING	Memc[P2C($1+50)]   	        # background type
+define	XC_FSTRING	Memc[P2C($1+50+SZ_FNAME+1)]     # filter string
+define	XC_CSTRING	Memc[P2C($1+50+2*SZ_FNAME+2)]   # cross-correlation type
+define	XC_PSTRING	Memc[P2C($1+50+3*SZ_FNAME+3)]   # peak centering
+
+define	XC_IMAGE	Memc[P2C($1+50+4*SZ_FNAME+4)]   # input image
+define	XC_REFIMAGE	Memc[P2C($1+50+5*SZ_FNAME+5)]   # reference image
+define	XC_REGIONS	Memc[P2C($1+50+6*SZ_FNAME+6)]   # regions list
+define	XC_DATABASE	Memc[P2C($1+50+7*SZ_FNAME+7)]   # shifts database
+define	XC_OUTIMAGE	Memc[P2C($1+50+8*SZ_FNAME+8)]   # output image
+define	XC_REFFILE	Memc[P2C($1+50+9*SZ_FNAME+9)]   # coordinates file
+define	XC_RECORD	Memc[P2C($1+50+10*SZ_FNAME+10)] # record
+
+# Define the id strings
+
+define	RC1		1
+define	RC2		2
+define	RL1		3
+define	RL2		4
+define	RZERO		5
+define	RXSLOPE		6
+define	RYSLOPE		7
+define	XSHIFTS		8
+define	YSHIFTS		9
+define	NREGIONS	10
+define	CREGION		11
+
+define	NREFPTS		12
+define	XREF		13
+define	YREF		14
+define	TRANSFORM	15
+define	IXLAG		16
+define	IYLAG		17
+define	XLAG		18
+define	YLAG		19
+define	DXLAG		20
+define	DYLAG		21
+
+define	BACKGRD		22
+define	BVALUER		23
+define	BVALUE		24
+define	BORDER		25
+define	LOREJECT	26
+define	HIREJECT	27
+define	APODIZE		28
+define	FILTER		29
+
+define	CFUNC		30
+define	XWINDOW		31
+define	YWINDOW		32
+define	XCOR		33
+
+define	PFUNC		34
+define	XCBOX		35
+define	YCBOX		36
+
+define	TXSHIFT		37
+define	TYSHIFT		38
+
+define	CSTRING		39
+define	BSTRING		40
+define	PSTRING		41
+define	FSTRING		42
+
+define	IMAGE		43
+define	REFIMAGE	44
+define	REGIONS		45
+define	OUTIMAGE	46
+define	REFFILE		47
+define	DATABASE	48
+define	RECORD		49
+
+# Define the default parameter values
+
+define	DEF_IXLAG	0
+define	DEF_IYLAG	0
+define	DEF_DXLAG	0
+define	DEF_DYLAG	0
+define	DEF_XWINDOW	5
+define	DEF_YWINDOW	5
+
+define	DEF_BACKGRD	XC_BNONE
+define	DEF_BORDER	INDEFI
+define  DEF_LOREJECT	INDEFR
+define	DEF_HIREJECT	INDEFR
+
+define	DEF_XCBOX	5
+define  DEF_YCBOX	5
+define	DEF_PFUNC	XC_CENTROID
+
+# Define the background fitting techniques
+
+define	XC_BNONE	1
+define	XC_MEAN		2
+define	XC_MEDIAN	3
+define	XC_SLOPE	4
+
+define  XC_BTYPES	"|none|mean|median|plane|"
+
+# Define the filtering options
+
+define	XC_FNONE	1
+define	XC_LAPLACE	2
+
+define  XC_FTYPES	"|none|laplace|"
+
+# Define the cross correlation techniques
+
+define	XC_DISCRETE	1
+define	XC_FOURIER	2
+define	XC_DIFFERENCE	3
+define	XC_FILE		4
+
+define	XC_CTYPES	"|discrete|fourier|difference|file|"
+
+# Define the peak fitting functions
+
+define	XC_PNONE	1
+define	XC_CENTROID	2
+define	XC_SAWTOOTH	3
+define	XC_PARABOLA	4
+define	XC_MARK		5
+
+define	XC_PTYPES	"|none|centroid|sawtooth|parabola|mark|"
+
+# Miscellaneous
+
+define	MAX_NREGIONS	100
+define	MAX_NREF	3
+define	MAX_NTRANSFORM	6
+
+# Commands
+
+define  XCMDS "|reference|input|regions|shifts|output|records|transform|\
+cregion|xlag|ylag|dxlag|dylag|background|border|loreject|hireject|apodize|\
+filter|correlation|xwindow|ywindow|function|xcbox|ycbox|show|mark|"
+
+define  XSHOW	"|data|background|correlation|center|"
+
+define	XSHOW_DATA			1
+define	XSHOW_BACKGROUND		2
+define	XSHOW_CORRELATION		3
+define	XSHOW_PEAKCENTER		4
+
+define	XCMD_REFIMAGE		1
+define	XCMD_IMAGE		2
+define	XCMD_REGIONS		3
+define	XCMD_DATABASE		4
+define	XCMD_OUTIMAGE		5
+define	XCMD_RECORD		6
+define	XCMD_REFFILE		7
+define	XCMD_CREGION		8
+define	XCMD_XLAG		9
+define	XCMD_YLAG		10
+define	XCMD_DXLAG		11
+define	XCMD_DYLAG		12
+define	XCMD_BACKGROUND		13
+define	XCMD_BORDER		14
+define	XCMD_LOREJECT		15
+define	XCMD_HIREJECT		16
+define	XCMD_APODIZE		17
+define	XCMD_FILTER		18
+define	XCMD_CORRELATION	19
+define	XCMD_XWINDOW		20
+define	XCMD_YWINDOW		21
+define	XCMD_PEAKCENTER		22
+define	XCMD_XCBOX		23
+define	XCMD_YCBOX		24
+define	XCMD_SHOW		25
+define	XCMD_MARK		26
+
+# Keywords
+
+define	KY_REFIMAGE		"reference"
+define	KY_IMAGE		"input"
+define	KY_REGIONS		"regions"
+define	KY_DATABASE		"shifts"
+define	KY_OUTIMAGE		"output"
+define	KY_RECORD		"record"
+define	KY_REFFILE		"coords"
+define	KY_NREGIONS		"nregions"
+define	KY_CREGION		"region"
+define	KY_XLAG			"xlag"
+define	KY_YLAG			"ylag"
+define	KY_DXLAG		"dxlag"
+define	KY_DYLAG		"dylag"
+define	KY_BACKGROUND		"background"
+define	KY_BORDER		"border"
+define	KY_LOREJECT		"loreject"
+define	KY_HIREJECT		"hireject"
+define	KY_APODIZE		"apodize"
+define	KY_FILTER		"filter"
+define	KY_CORRELATION		"correlation"
+define	KY_XWINDOW		"xwindow"
+define	KY_YWINDOW		"ywindow"
+define	KY_PEAKCENTER		"function"
+define	KY_XCBOX		"xcbox"
+define	KY_YCBOX		"ycbox"
+define	KY_TXSHIFT		"xshift"
+define	KY_TYSHIFT		"yshift"