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# FIBRESPONSE -- Make a aperture response spectrum using a flat field
# and a throughput file or image.
procedure fibresponse (flat, throughput, apreference, response)
string flat {prompt="Flat field spectrum"}
string throughput {prompt="Throughput file or image"}
string apreference {prompt="Aperture reference spectrum"}
string response {prompt="Response spectrum"}
bool recenter = no {prompt="Recenter apertures?"}
bool edit = yes {prompt="Edit/review apertures?"}
bool trace = no {prompt="Trace spectra?"}
bool clean = no {prompt="Detect and replace bad pixels?"}
bool fitflat = no {prompt="Fit and ratio flat field spectrum?"}
bool interactive = yes {prompt="Fit flat field interactively?"}
string function = "spline3" {prompt="Fitting function",
enum="spline3|legendre|chebyshev|spline1"}
int order = 20 {prompt="Fitting function order", min=1}
begin
string imtype, mstype
file flat2d, skyflat2d, apref, resp
file temp1, temp2, log1, log2
int n, ap, naxis
real respval
struct err
imtype = "." // envget ("imtype")
i = stridx (",", imtype)
if (i > 0)
imtype = substr (imtype, 1, i-1)
mstype = ".ms" // imtype
n = strlen (imtype)
flat2d = flat
skyflat2d = throughput
apref = apreference
resp = response
temp1 = mktemp ("tmp")
temp2 = mktemp ("tmp")
# Check required input and output.
if (resp == "" || resp == flat2d || resp == skyflat2d)
error (1, "Bad response image name")
if (flat2d == "" && skyflat2d == "")
error (1, "No flat field or throughput specified")
if (flat2d != "") {
i = strlen (flat2d)
if (i > n && substr (flat2d, i-n+1, i) == imtype)
flat2d = substr (flat2d, 1, i-n)
if (!access (flat2d // imtype)) {
printf ("Flat field spectrum not found - %s%s\n",
flat2d, imtype) | scan (err)
error (1, err // "\nCheck settting of imtype")
}
}
if (skyflat2d != "") {
i = strlen (skyflat2d)
if (i > n && substr (skyflat2d, i-n+1, i) == imtype)
skyflat2d = substr (skyflat2d, 1, i-n)
if (!access (skyflat2d // imtype)) {
if (!access (skyflat2d)) {
printf ("Throughput file or image not found - %s%s\n",
skyflat2d, imtype) | scan (err)
error (1, err // "\nCheck settting of imtype")
}
if (flat2d == "") {
i = strlen (apref)
if (i > n && substr (apref, i-n+1, i) == imtype)
apref = substr (apref, 1, i-n)
if (!access (apref // imtype))
error (1, "Aperture reference image required")
}
}
}
# Set logging
tee.append = yes
if (logfile == "")
log1 = "dev$null"
else
log1 = logfile
if (verbose)
log2 = "STDOUT"
else
log2 = "dev$null"
# Initialize APSCRIPT
apscript.references = apref
if (recenter)
apscript.ansrecenter = "YES"
else
apscript.ansrecenter = "NO"
apscript.ansresize = "NO"
if (edit)
apscript.ansedit = "yes"
else
apscript.ansedit = "NO"
if (trace)
apscript.anstrace = "YES"
else
apscript.anstrace = "NO"
apscript.ansextract = "YES"
# If using a flat field extract it if necessary and possibly fit it
# and ratio the individual apertures by an overall smooth function
if (flat2d != "") {
if (!access (flat2d // mstype)) {
print ("Extract flat field ", flat2d) | tee (log1)
if (flat2d != apref)
apscript (flat2d, output=resp, background="none",
clean=clean, extras=no)
else
apscript (flat2d, output=resp, ansrecenter="NO",
ansrecenter="NO", ansresize="NO", ansedit="NO",
anstrace="NO", background="none",
clean=clean, extras=no)
} else
imcopy (flat2d//".ms", resp, verbose=no)
if (fitflat) {
print ("Fit and ratio flat field ", flat2d) | tee (log1)
blkavg (resp, temp1, option="average", b1=1, b2=10000)
imcopy (temp1//"[*,1]", temp1, verbose=no)
fit1d (temp1, temp1, "fit", axis=1, interactive=interactive,
sample="*", naverage=1, function=function, order=order,
low_reject=0., high_reject=0., niterate=1, grow=0.,
graphics="stdgraph")
sarith (resp, "/", temp1, resp, w1=INDEF, w2=INDEF,
apertures="", bands="", beams="", apmodulus=0, reverse=no,
ignoreaps=yes, format="multispec", renumber=no,
offset=0, clobber=yes, merge=no, errval=0, verbose=no)
imdelete (temp1, verify=no)
}
}
# If using a throughput image extract it if necessary.
# Apply it to the flat field if given and otherwise only
# compute the throughput through each aperture.
if (skyflat2d != "") {
if (access (skyflat2d // imtype)) {
if (!access (skyflat2d // mstype)) {
print ("Extract throughput image ", skyflat2d) | tee (log1)
apscript (skyflat2d, output=temp1, background="none",
clean=clean, extras=no)
temp2 = temp1
} else
temp2 = skyflat2d // ".ms"
if (flat2d != "") {
print ("Correct flat field to throughput image") |
tee (log1)
sarith (temp2, "/", resp, temp1, w1=INDEF, w2=INDEF,
apertures="", bands="", beams="", apmodulus=0,
reverse=no, ignoreaps=no, format="multispec",
renumber=no, offset=0, clobber=yes, merge=no,
errval=0, verbose=no)
fit1d (temp1, temp1, type="fit", axis=1,
interactive=no, sample="*", naverage=1,
function="legendre", order=1, niterate=0)
sarith (resp, "*", temp1, resp, w1=INDEF, w2=INDEF,
apertures="", bands="", beams="", apmodulus=0,
reverse=no, ignoreaps=yes, format="multispec",
renumber=no, offset=0, clobber=yes, merge=no,
errval=0, verbose=no)
imdelete (temp1, verify=no)
} else {
print ("Compute aperture throughput from image") |
tee (log1)
fit1d (temp2, resp, type="fit", axis=1,
interactive=no, sample="*", naverage=1,
function="legendre", order=1, niterate=0)
if (temp2 == temp1)
imdelete (temp2, verify=no)
}
# If a flat field and throughput file are used scale the average
# flat field in each aperture to those values
} else if (flat2d != "") {
print ("Correct flat field with throughput file ", skyflat2d) |
tee (log1)
fit1d (resp, resp, type="ratio", axis=1,
interactive=no, sample="*", naverage=1,
function="legendre", order=1, niterate=0)
list = skyflat2d
while (fscan (list, ap, respval) != EOF) {
sarith (resp, "*", respval, resp, w1=INDEF, w2=INDEF,
apertures=ap, bands="", beams="", apmodulus=0,
reverse=no, ignoreaps=no, format="multispec",
renumber=no, offset=0, clobber=yes, merge=yes,
errval=0., verbose=no, >& "dev$null")
}
list = ""
# If only a throughput file is given create the response from the
# aperture reference and set the aperture response to the specified
# values.
} else {
print ("Set aperture throughput using ", skyflat2d) | tee (log1)
if (!access (apref // mstype)) {
apscript (apref, output=resp, ansrecenter="NO",
ansrecenter="NO", ansresize="NO", ansedit="NO",
anstrace="NO", background="none",
clean=no, extras=no)
sarith (resp, "replace", "0", resp, w1=INDEF,
w2=INDEF, apertures="", bands="", beams="", apmodulus=0,
reverse=no, ignoreaps=no, format="multispec",
renumber=no, offset=0, clobber=yes, merge=yes,
errval=0., verbose=no)
} else
sarith (apref//".ms", "replace", "0", resp, w1=INDEF,
w2=INDEF, apertures="", bands="", beams="", apmodulus=0,
reverse=no, ignoreaps=no, format="multispec",
renumber=no, offset=0, clobber=yes, merge=yes,
errval=0., verbose=no)
list = skyflat2d
while (fscan (list, ap, respval) != EOF) {
sarith (resp, "replace", respval, resp, w1=INDEF, w2=INDEF,
apertures=ap, bands="", beams="", apmodulus=0,
reverse=no, ignoreaps=no, format="multispec",
renumber=no, offset=0, clobber=yes, merge=yes,
errval=0., verbose=no)
}
list = ""
}
}
# The final response is normalized to overall unit mean and the
# average aperture response is printed.
print ("Create the normalized response ", resp) | tee (log1)
bscale (resp, resp, bzero="0.", bscale="mean", section="",
step=1, upper=INDEF, lower=INDEF, verbose=yes) | tee (log1, >log2)
blkavg (resp, temp1, option="average", b1=10000, b2=1)
print ("Average aperture response:") | tee (log1, >log2)
naxis = 5
#hselect (temp1, "naxis", yes) | scan (naxis)
#if (naxis == 1)
# listpixels (temp1) | tee (log1, >log2)
#else
# listpixels (temp1//"[1,*]") | tee (log1, >log2)
hselect (temp1, "naxis", yes, > temp2)
list = temp2; ap = fscan (list, naxis)
if (naxis == 1)
listpixels (temp1) | tee (log1, >log2)
else
listpixels (temp1//"[1,*]") | tee (log1, >log2)
list = ""; delete (temp2, verify=no)
imdelete (temp1, verify=no)
end
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