1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
|
# PROC -- Process spectra from 2D to wavelength calibrated 1D.
# This program combines the operations of extraction, flat fielding,
# fiber throughput correction, dispersion correction, and sky subtraction
# in as simple and noninteractive way as possible. Certain assumptions
# are made about the data and the output. A blank sky image, called a
# sky flat, may be used to determine the instrument throughput. The data
# must all share the same position on the 2D image and the same
# dispersion solution apart from small instrumental changes which can be
# tracked automatically.
procedure proc (objects, apref, flat, throughput, arcs1, arcs2, arcreplace,
arctable, fibers, apidtable, crval, cdelt, objaps, skyaps, arcaps,
objbeams, skybeams, arcbeams, scattered, fitflat, recenter, edit,
trace, arcap, clean, dispcor, savearcs, skyalign, skysubtract,
skyedit, saveskys, splot, redo, update, batch, listonly)
string objects {prompt="List of object spectra"}
file apref {prompt="Aperture reference spectrum"}
file flat {prompt="Flat field spectrum"}
file throughput {prompt="Throughput file or image (optional)"}
string arcs1 {prompt="List of arc spectra"}
string arcs2 {prompt="List of shift arc spectra"}
file arcreplace {prompt="Special aperture replacements"}
file arctable {prompt="Arc assignment table (optional)\n"}
int fibers {prompt="Number of fibers"}
file apidtable {prompt="Aperture identifications"}
string crval = "INDEF" {prompt="Approximate wavelength"}
string cdelt = "INDEF" {prompt="Approximate dispersion"}
string objaps {prompt="Object apertures"}
string skyaps {prompt="Sky apertures"}
string arcaps {prompt="Arc apertures"}
string objbeams {prompt="Object beam numbers"}
string skybeams {prompt="Sky beam numbers"}
string arcbeams {prompt="Arc beam numbers\n"}
bool scattered {prompt="Subtract scattered light?"}
bool fitflat {prompt="Fit and ratio flat field spectrum?"}
bool recenter {prompt="Recenter object apertures?"}
bool edit {prompt="Edit/review object apertures?"}
bool trace {prompt="Trace object spectra?"}
bool arcap {prompt="Use object apertures for arcs?"}
bool clean {prompt="Detect and replace bad pixels?"}
bool dispcor {prompt="Dispersion correct spectra?"}
bool savearcs {prompt="Save internal arcs?"}
bool skyalign {prompt="Align sky lines?"}
bool skysubtract {prompt="Subtract sky?"}
bool skyedit {prompt="Edit the sky spectra?"}
bool saveskys {prompt="Save sky spectra?"}
bool splot {prompt="Plot the final spectrum?"}
bool redo {prompt="Redo operations if previously done?"}
bool update {prompt="Update spectra if cal data changes?"}
bool batch {prompt="Extract objects in batch?"}
bool listonly {prompt="List steps but don't process?\n"}
real datamax = INDEF {prompt="Max data value / cosmic ray threshold"}
string ansskyedit = "yes" {prompt="Edit the sky spectra?", mode="q"}
bool newaps, newresp, newdisp, newarcs, dobatch
string anssplot = "yes" {prompt="Splot spectrum?", mode="q",
enum="no|yes|NO|YES"}
string extn = ".ms" {prompt="Extraction extension"}
struct *fd1, *fd2, *fd3
begin
string imtype, mstype
string arcref1, arcref2, spec, arc, align=""
string arcref1ms, arcref2ms, specms, arcms, response
string objs, temp, temp1, done
string str1, str2, str3, str4, arcrefs, log1, log2
bool scat, reextract, extract, disp, disperr, sky, log
bool skyedit1, skyedit2, splot1, splot2
int i, j, n, nspec
struct err
# Call a separate task to do the listing to minimize the size of
# this script and improve it's readability.
dobatch = no
if (listonly) {
listonly (objects, apidtable, apref, flat, throughput, arcs1, arcs2,
scattered, dispcor, skysubtract, redo, update)
bye
}
imtype = "." // envget ("imtype")
i = stridx (",", imtype)
if (i > 0)
imtype = substr (imtype, 1, i-1)
mstype = ".ms" // imtype
n = strlen (imtype)
# Temporary files used repeatedly in this script. Under some
# abort circumstances these files may be left behind.
objs = mktemp ("tmp$iraf")
temp = mktemp ("tmp$iraf")
temp1 = mktemp ("tmp$iraf")
done = mktemp ("tmp$iraf")
if (apidtable != "") {
i = strlen (apidtable)
if (i > n && substr (apidtable, i-n+1, i) == imtype) {
apidtable = substr (apidtable, 1, i-n)
i = strlen (apidtable)
}
for (j=1; j<=i && substr(apidtable,j,j)==" "; j+=1);
apidtable = substr (apidtable, j, i)
}
i = strlen (apidtable)
if (i == 0)
extn = ".ms"
else {
extn = apidtable
while (yes) {
i = stridx ("/$]", extn)
if (i == 0)
break
j = strlen (extn)
extn = substr (extn, i+1, j)
}
extn = extn // ".ms"
}
# Get query parameter.
getspec (objects, objs)
if (arctable == "" || arctable == " ") {
if (arcs2 == "" || arcs2 == " ")
arcrefs = arcs1
else
arcrefs = arcs2
} else
arcrefs = arctable
arcref1 = ""
arcref2 = ""
# Rather than always have switches on the logfile and verbose flags
# we use TEE and set a file to "dev$null" if output is not desired.
# We must check for the null string to signify no logfile.
tee.append = yes
if (logfile == "")
log1 = "dev$null"
else
log1 = logfile
if (verbose)
log2 = "STDOUT"
else
log2 = "dev$null"
# If the update switch is used changes in the calibration data
# can cause images to be reprocessed (if they are in the object
# list). Possible changes are in the aperture definitions,
# response function, dispersion solution, and sensitivity
# function. The newarcs flag is used to only go through the arc
# image headers once setting the reference spectrum, airmass, and
# UT.
newaps = no
newresp = no
newdisp = no
newarcs = yes
# Check if there are aperture definitions in the database and
# define them if needed. This is usually somewhat interactive.
# Delete the database entry to start fresh if we enter this
# because of a redo. Set the newaps flag in case an update is
# desired.
i = strlen (apref)
if (i > n && substr (apref, i-n+1, i) == imtype)
apref = substr (apref, 1, i-n)
getspec (apref, temp)
fd1 = temp
if (fscan (fd1, apref) == EOF)
error (1, "No aperture reference")
fd1 = ""; delete (temp, verify=no)
# Initialize
apscript.saturation = INDEF
apscript.references = apref
apscript.profiles = ""
apscript.apidtable = apidtable
apscript.nfind = fibers
apscript.clean = clean
if (splot) {
splot1 = yes
splot2 = yes
} else {
splot1 = no
splot2 = no
}
reextract = redo
if (reextract || !access (database // "/ap" // apref // extn)) {
if (!access (apref // imtype)) {
printf ("Aperture reference spectrum not found - %s%s\n",
apref, imtype) | scan (err)
error (1, err // "\nCheck settting of imtype")
}
print ("Set reference apertures for ", apref) | tee (log1)
if (access (database // "/ap" // apref))
delete (database // "/ap" // apref, verify=no)
if (access (database // "/ap" // apref//extn))
delete (database // "/ap" // apref // extn, verify=no)
apscript.ansresize = "yes"
apscript.ansedit = "yes"
apscript.ansfittrace = "yes"
apscript (apref, references="", ansfind="YES", ansrecenter="NO",
anstrace="YES", ansextract="NO")
newaps = yes
copy (database//"/ap"//apref, database//"/ap"//apref//extn,
verbose=no)
} else {
if (access (database // "/ap" // apref))
delete (database // "/ap" // apref, verify=no)
copy (database//"/ap"//apref//extn, database//"/ap"//apref,
verbose=no)
}
if (recenter)
apscript.ansrecenter = "YES"
else
apscript.ansrecenter = "NO"
apscript.ansresize = "NO"
if (edit)
apscript.ansedit = "yes"
else
apscript.ansedit = "NO"
if (trace)
apscript.anstrace = "YES"
else
apscript.anstrace = "NO"
if (scattered) {
apscript.ansfitscatter = "yes"
apscript.ansfitsmooth = "yes"
}
apscript.ansfittrace = "NO"
apscript.ansextract = "YES"
apscript.ansreview = "NO"
if (skyedit) {
skyedit1 = yes
skyedit2 = yes
} else {
skyedit1 = no
skyedit2 = no
}
# The next step is to setup the scattered light correction if needed.
# We use the flat field image for the interactive setting unless
# one is not used and then we use the aperture reference.
# If these images have been scattered light corrected we assume the
# scattered light functions parameters are correctly set.
i = strlen (flat)
if (i > n && substr (flat, i-n+1, i) == imtype)
flat = substr (flat, 1, i-n)
if (flat != "")
spec = flat
else
spec = apref
getspec (spec, temp)
fd1 = temp
if (fscan (fd1, spec) == EOF)
error (1, "No flat field")
fd1 = ""; delete (temp, verify=no)
scat = no
if (scattered) {
if (redo && access (spec//"noscat"//imtype)) {
imdelete (spec, verify=no)
imrename (spec//"noscat", spec)
}
hselect (spec, "apscatte", yes) | scan (str1)
if (nscan() == 0)
scat = yes
}
if (scat) {
print ("Subtract scattered light from ", spec) | tee (log1)
#apscript.ansfitscatter = "yes"
#apscript.ansfitsmooth = "yes"
imrename (spec, spec//"noscat")
apscript (spec//"noscat", output=spec, ansextract="NO",
ansscat="YES", anssmooth="YES")
#apscript.ansfitscatter = "NO"
#apscript.ansfitsmooth = "NO"
}
# The next step is to process the flat field image which is used
# as a flat field and a throughput correction.
spec = throughput
i = strlen (spec)
if (i > n && substr (spec, i-n+1, i) == imtype)
spec = substr (spec, 1, i-n)
specms = spec // mstype
if (spec != "" && access (spec//imtype)) {
getspec (spec, temp)
fd1 = temp
if (fscan (fd1, spec) == EOF)
error (1, "No flat field")
fd1 = ""; delete (temp, verify=no)
scat = no
if (scattered) {
if (redo && access (spec//"noscat"//imtype)) {
imdelete (spec, verify=no)
imrename (spec//"noscat", spec)
}
hselect (spec, "apscatte", yes) | scan (str1)
if (nscan() == 0)
scat = yes
}
if (scat) {
print ("Subtract scattered light from ", spec) | tee (log1)
imrename (spec, spec//"noscat")
apscript (spec//"noscat", output=spec, ansextract="NO",
ansscat="YES", anssmooth="YES")
}
}
response = ""
if (flat != "" || spec != "") {
if (extn == ".ms")
response = flat // spec // "norm.ms"
else
response = flat // spec // extn
reextract = redo || (update && newaps)
if (reextract || !access (response // imtype) || (redo && scat)) {
print ("Create response function ", response) | tee (log1)
if (access (response // imtype))
imdelete (response, verify=no)
if (access (flat //mstype))
imdelete (flat//mstype, verify=no)
if (access (specms))
imdelete (specms, verify=no)
fibresponse (flat, spec, apref, response, recenter=recenter,
edit=edit, trace=trace, clean=clean,
fitflat=fitflat, interactive=params.f_interactive,
function=params.f_function, order=params.f_order)
newresp = yes
}
}
# If not dispersion correcting we can go directly to extracting
# the object spectra. The reference arcs are the first on
# the arc lists. The processing of the reference arcs is done
# by the task ARCREFS.
if (dispcor) {
getspec (arcs1, temp)
fd1 = temp
if (fscan (fd1, arcref1) == EOF)
error (1, "No reference arcs")
fd1 = ""; delete (temp, verify=no)
if (!access (arcref1 // imtype)) {
printf ("Arc reference spectrum not found - %s%s\n",
arcref1, imtype) | scan (err)
error (1, err // "\nCheck settting of imtype")
}
arcref1ms = arcref1 // extn
reextract = redo || (update && newaps)
if (reextract && access (arcref1ms//imtype))
imdelete (arcref1ms, verify=no)
getspec (arcs2, temp)
fd1 = temp
if (fscan (fd1, arcref2) == EOF)
arcref2 = ""
else {
if (!access (arcref2 // imtype)) {
printf ("Arc reference spectrum not found - %s%s\n",
arcref2, imtype) | scan (err)
error (1, err // "\nCheck settting of imtype")
}
arcref2ms = arcref2 // extn
if (reextract && access (arcref2ms//imtype))
imdelete (arcref2ms, verify=no)
}
fd1 = ""; delete (temp, verify=no)
arcrefs (arcref1, arcref2, extn, arcreplace, apidtable, response,
crval, cdelt, done, log1, log2)
# Define alignment if needed.
if (skyalign) {
align = "align" // extn // imtype
if (reextract)
imdelete (align, verify=no, >& "dev$null")
}
}
# Now we are ready to process the object spectra.
reextract = redo || (update && (newaps || newresp || newdisp))
fd1 = objs
while (fscan (fd1, spec) != EOF) {
# Check if previously done; i.e. arc.
if (access (done)) {
fd2 = done
while (fscan (fd2, specms) != EOF)
if (spec == specms)
break
if (spec == specms)
next
fd2 = ""
}
if (!access (spec // imtype)) {
printf ("Object spectrum not found - %s%s\n",
spec, imtype) | tee (log1)
print ("Check settting of imtype")
}
specms = spec // mstype
# Determine required operations from the flags and image header.
scat = no
extract = no
disp = no
sky = no
if (scattered) {
if (redo && access (spec//"noscat"//imtype)) {
imdelete (spec, verify=no)
imrename (spec//"noscat", spec)
}
hselect (spec, "apscatte", yes) | scan (str1)
if (nscan() == 0)
scat = yes
}
if (reextract || !access (specms) || (redo && scat))
extract = yes
else {
hselect (specms, "dclog1", yes) | scan (str1)
if (nscan () == 1) {
extract = update && newdisp
if (update && !newdisp)
# We really should check if REFSPEC will assign
# different reference spectra.
;
} else
disp = dispcor
hselect (specms, "skysub", yes) | scan (str1)
if (nscan() == 0)
sky = skysubtract
}
if (extract) {
disp = dispcor
sky = skysubtract
}
# If fully processed go to the next object.
if (!extract && !disp && !sky)
next
# If not interactive and the batch flag is set submit rest to batch.
if (batch && !skyedit1 && !skyedit2 && !splot1 && !splot2 &&
apscript.ansedit == "NO" && (!skyalign || access (align))) {
fd1 = ""; delete (objs, verify=no)
apscript.ansfitscatter = "NO"
apscript.ansfitsmooth = "NO"
flprcache
batch.objects = objects
batch.datamax = datamax
batch.response = response
batch.arcs1 = arcs1
batch.arcs2 = arcs2
batch.arcref1 = arcref1
batch.arcref2 = arcref2
batch.arcreplace = arcreplace
batch.apidtable = apidtable
batch.arcrefs = arcrefs
batch.extn = extn
batch.objaps = objaps
batch.skyaps = skyaps
batch.arcaps = arcaps
batch.objbeams = objbeams
batch.skybeams = skybeams
batch.arcbeams = arcbeams
batch.done = done
batch.logfile = log1
batch.redo = reextract
batch.update = update
batch.scattered = scattered
batch.arcap = arcap
batch.dispcor = dispcor
batch.savearcs = savearcs
batch.skyalign = skyalign
batch.skysubtract = skysubtract
batch.saveskys = saveskys
batch.newaps = newaps
batch.newresp = newresp
batch.newdisp = newdisp
batch.newarcs = newarcs
dobatch = yes
return
}
# Process the spectrum in foreground.
if (extract) {
if (access (specms))
imdelete (specms, verify=no)
if (scat) {
print ("Subtract scattered light from ", spec) | tee (log1)
imrename (spec, spec//"noscat")
apscript (spec//"noscat", output=spec, ansextract="NO",
ansscat="YES", anssmooth="YES")
}
print ("Extract object spectrum ", spec) | tee (log1)
hselect (spec, "date-obs,ut,exptime", yes, > temp1)
hselect (spec, "ra,dec,epoch,st", yes, >> temp1)
fd3 = temp1
if (fscan (fd3, str1, str2, str3) == 3) {
setjd (spec, observatory=observatory, date="date-obs",
time="ut", exposure="exptime", jd="jd", hjd="",
ljd="ljd", utdate=yes, uttime=yes, listonly=no,
>> log1)
if (fscan (fd3, str1, str2, str3, str4) == 4)
setairmass (spec, intype="beginning",
outtype="effective", exposure="exptime",
observatory=observatory, show=no, update=yes,
override=yes, >> log1)
}
fd3 = ""; delete (temp1, verify=no)
apscript (spec, nsubaps=params.nsubaps, saturation=datamax)
sapertures (specms, apertures="", apidtable=apidtable,
wcsreset=no, verbose=no, beam=INDEF, dtype=INDEF, w1=INDEF,
dw=INDEF, z=INDEF, aplow=INDEF, aphigh=INDEF, title=INDEF)
if (response != "") {
if (params.nsubaps == 1)
sarith (specms, "/", response, specms, w1=INDEF,
w2=INDEF, apertures="", bands="", beams="",
apmodulus=0, reverse=no, ignoreaps=no,
format="multispec", renumber=no, offset=0,
clobber=yes, merge=no, errval=0, verbose=no)
else {
blkrep (response, temp, 1, params.nsubaps)
sarith (specms, "/", temp, specms, w1=INDEF,
w2=INDEF, apertures="", bands="", beams="",
apmodulus=0, reverse=no, ignoreaps=yes,
format="multispec", renumber=no, offset=0,
clobber=yes, merge=no, errval=0, verbose=no)
imdelete (temp, verify=no)
}
}
}
disperr = no
if (disp) {
# Fix arc headers if necessary.
if (newarcs) {
getspec (arcs1, temp)
fd2 = temp
while (fscan (fd2, arc) != EOF) {
hselect (arc, "date-obs,ut,exptime", yes, > temp1)
hselect (arc, "ra,dec,epoch,st", yes, >> temp1)
fd3 = temp1
if (fscan (fd3, str1, str2, str3) == 3) {
setjd (arc, observatory=observatory, date="date-obs",
time="ut", exposure="exptime", jd="jd", hjd="",
ljd="ljd", utdate=yes, uttime=yes, listonly=no,
>> log1)
if (fscan (fd3, str1, str2, str3, str4) == 4)
setairmass (arc, intype="beginning",
outtype="effective", exposure="exptime",
observatory=observatory, show=no, update=yes,
override=yes, >> log1)
}
fd3 = ""; delete (temp1, verify=no)
hedit (arc, "refspec1", arc, add=yes, verify=no,
show=no, update=yes)
hedit (arc, "arctype", "henear", add=yes, verify=no,
show=no, update=yes)
}
fd2 = ""; delete (temp, verify=no)
getspec (arcs2, temp)
fd2 = temp
while (fscan (fd2, arc) != EOF) {
hselect (arc, "date-obs,ut,exptime", yes, > temp1)
hselect (arc, "ra,dec,epoch,st", yes, >> temp1)
fd3 = temp1
if (fscan (fd3, str1, str2, str3) == 3) {
setjd (arc, observatory=observatory,
date="date-obs", time="ut", exposure="exptime",
jd="jd", hjd="", ljd="ljd", utdate=yes,
uttime=yes, listonly=no, >> log1)
if (fscan (fd3, str1, str2, str3, str4) == 4)
setairmass (arc, intype="beginning",
outtype="effective", exposure="exptime",
observatory=observatory, show=no,
update=yes, override=yes, >> log1)
}
fd3 = ""; delete (temp1, verify=no)
hedit (arc, "refspec1", arc, add=yes, verify=no,
show=no, update=yes)
hedit (arc, "arctype", "shift", add=yes, verify=no,
show=no, update=yes)
}
fd2 = ""; delete (temp, verify=no)
newarcs = no
}
print ("Assign arc spectra for ", spec) | tee (log1)
refspectra (spec, references=arcrefs,
apertures="", refaps="", ignoreaps=no,
select=params.select, sort=params.sort,
group=params.group, time=params.time,
timewrap=params.timewrap, override=yes, confirm=no,
assign=yes, logfiles="STDOUT", verbose=no) |
tee (log1, > log2)
doarcs (spec, response, arcref1, arcref2, extn, arcreplace,
apidtable, arcaps, arcbeams, savearcs, reextract, arcap,
log1, no, done)
hselect (specms, "refspec1", yes, > temp)
fd2 = temp
i = fscan (fd2, arc)
fd2 = ""; delete (temp, verify=no)
if (i < 1) {
print ("No arc reference assigned for ", spec) | tee (log1)
disperr = yes
} else {
if (skyalign)
doalign (spec, specms, align, arcref1ms, log1, no)
print ("Dispersion correct ", spec) | tee (log1)
dispcor (specms, "", linearize=params.linearize,
database=database, table=arcref1ms, w1=INDEF,
w2=INDEF, dw=INDEF, nw=INDEF, log=params.log,
flux=params.flux, samedisp=no, global=no,
ignoreaps=no, confirm=no, listonly=no,
verbose=verbose, logfile=logfile)
if (params.nsubaps > 1) {
imrename (specms, temp, verbose=no)
scopy (temp, specms, w1=INDEF, w2=INDEF,
apertures="1-999", bands="", beams="", apmodulus=0,
offset=0, format="multispec", clobber=no, merge=no,
renumber=no, verbose=no)
blkavg (temp, temp, 1, params.nsubaps, option="sum")
imcopy (temp, specms//"[*,*]", verbose=no)
imdelete (temp, verify=no)
}
}
}
if (sky && !disperr) {
str1 = ""
if (skyaps != "")
str1 = "skyaps=" // skyaps
if (skybeams != "")
str1 = str1 // " skybeams=" // skybeams
print ("Sky subtract ", spec, ": ", str1) | tee (log1)
if (skyedit1) {
str1 = substr (ansskyedit, 1, 1)
if (str1 == "N" || str1 == "Y")
skyedit1 = no
if (str1 == "n" || str1 == "N")
skyedit2 = no
else
skyedit2 = yes
}
skysub.reject = params.reject
skysub (specms, output="", objaps=objaps, skyaps=skyaps,
objbeams=objbeams, skybeams=skybeams, skyedit=skyedit2,
combine=params.combine, scale=params.scale,
saveskys=saveskys, logfile=logfile)
params.reject = skysub.reject
hedit (specms, "skysub", yes, add=yes, show=no, verify=no,
update=yes)
}
if (!disperr && (extract || disp || sky)) {
if (splot1) {
print (specms, ":")
str1 = anssplot
if (str1 == "NO" || str1 == "YES")
splot1 = no
if (str1 == "no" || str1 == "NO")
splot2 = no
else
splot2 = yes
}
if (splot2)
splot (specms)
}
print (spec, >> done)
}
fd1 = ""; delete (objs, verify=no)
if (access (done))
delete (done, verify=no)
end
|