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|
include <error.h>
include <imhdr.h>
include <gset.h>
include <smw.h>
include "ecidentify.h"
define HELP "noao$onedspec/ecidentify/ecidentify.key"
define PROMPT "ecidentify options"
define PAN 1 # Pan graph
define ZOOM 2 # Zoom graph
# EC_IDENTIFY -- Identify echelle features in an image.
# This is the basic interactive loop.
procedure ec_identify (ec)
pointer ec # EC pointer
real wx, wy
int wcs, key
char cmd[SZ_LINE]
char newimage[SZ_FNAME]
int i, j, last, all, prfeature, nfeatures1, npeaks
bool answer
double pix, fit, user, shift, pix_shift, z_shift
pointer peaks
bool clgetb()
int clgcur(), scan(), nscan(), find_peaks(), ec_next(), ec_previous()
int ec_line()
double ec_center(), ec_fittopix(), ec_fitpt(), ec_shift(), ec_rms()
double ecf_getd()
errchk ec_gdata(), ec_graph(), ec_dbread(), xt_mk1d(), ec_line()
define newim_ 10
define newkey_ 20
define beep_ 99
begin
newim_ # Start here for each new image.
# Get the image data. Return if there is an error.
iferr (call ec_gdata (ec)) {
call erract (EA_WARN)
return
}
# Look for a database entry for the image.
iferr {
call ec_dbread (ec, Memc[EC_IMAGE(ec)], NO)
EC_NEWDBENTRY(ec) = NO
} then
if ((EC_NFEATURES(ec) > 0) || (EC_ECF(ec) != NULL))
EC_NEWDBENTRY(ec) = YES
# Set the coordinate array and the feature data.
iferr (call ec_fitdata (ec))
call erract (EA_WARN)
call ec_fitfeatures (ec)
# Begin with the first image line.
EC_LINE(ec) = 1
EC_AP(ec) = APS(ec,EC_LINE(ec))
EC_ORDER(ec) = ORDERS(ec,EC_LINE(ec))
call ec_gline (ec, EC_LINE(ec))
# Initialize.
EC_GTYPE(ec) = PAN
EC_REFIT(ec) = NO
EC_NEWFEATURES(ec) = NO
EC_NEWECF(ec) = NO
EC_CURRENT(ec) = 0
i = ec_next (ec, EC_CURRENT(ec))
last = EC_CURRENT(ec)
all = 0
newimage[1] = EOS
key = 'r'
repeat {
prfeature = YES
if (all != 0)
all = mod (all + 1, 3)
switch (key) {
case '?': # Page help
call gpagefile (EC_GP(ec), HELP, PROMPT)
case ':': # Execute colon commands
if (cmd[1] == '/')
call gt_colon (cmd, EC_GP(ec), EC_GT(ec), EC_NEWGRAPH(ec))
else
call ec_colon (ec, cmd, newimage, prfeature)
case ' ': # Go to the current feature
case '.': # Go to the nearest feature
if (EC_NFEATURES(ec) == 0)
goto beep_
call ec_nearest (ec, double (wx))
case '-': # Go to the previous feature
if (ec_previous (ec, EC_CURRENT(ec)) == EOF)
goto beep_
case '+', 'n': # Go to the next feature
if (ec_next (ec, EC_CURRENT(ec)) == EOF)
goto beep_
case 'a': # Set the all flag for the next key
all = 1
case 'c': # Center features on data
if (all != 0) {
call eprintf ("Recentering features ...\n")
for (i = 1; i <= EC_NFEATURES(ec); i = i + 1) {
call ec_gline (ec, LINE(ec,i))
call gseti (EC_GP(ec), G_PLTYPE, 0)
call ec_mark (ec, i)
call gseti (EC_GP(ec), G_PLTYPE, 1)
FWIDTH(ec,i) = EC_FWIDTH(ec)
PIX(ec,i) = ec_center (ec, PIX(ec,i), FWIDTH(ec,i),
FTYPE(ec,i))
if (!IS_INDEFD (PIX(ec,i))) {
FIT(ec,i) = ec_fitpt (ec, APN(ec,i), PIX(ec,i))
call ec_mark (ec, i)
} else {
call ec_delete (ec, i)
i = i - 1
}
}
call ec_gline (ec, EC_LINE(ec))
EC_NEWFEATURES(ec) = YES
} else {
if (EC_NFEATURES(ec) == 0)
goto beep_
call ec_nearest (ec, double (wx))
pix = PIX(ec,EC_CURRENT(ec))
pix = ec_center (ec, pix, EC_FWIDTH(ec),
FTYPE(ec,EC_CURRENT(ec)))
if (!IS_INDEFD (pix)) {
call gseti (EC_GP(ec), G_PLTYPE, 0)
call ec_mark (ec, EC_CURRENT(ec))
PIX(ec,EC_CURRENT(ec)) = pix
FWIDTH(ec,EC_CURRENT(ec)) = EC_FWIDTH(ec)
FIT(ec,EC_CURRENT(ec)) =
ec_fitpt (ec, APN(ec,EC_CURRENT(ec)), pix)
call gseti (EC_GP(ec), G_PLTYPE, 1)
call ec_mark (ec, EC_CURRENT(ec))
EC_NEWFEATURES(ec) = YES
} else {
call eprintf ("Centering failed\n")
prfeature = NO
}
}
case 'd': # Delete features
if (all != 0) {
EC_NFEATURES(ec) = 0
EC_CURRENT(ec) = 0
EC_NEWFEATURES(ec) = YES
EC_NEWGRAPH(ec) = YES
} else {
if (EC_NFEATURES(ec) == 0)
goto beep_
call ec_nearest (ec, double (wx))
call gseti (EC_GP(ec), G_PLTYPE, 0)
call ec_mark (ec, EC_CURRENT(ec))
call gseti (EC_GP(ec), G_PLTYPE, 1)
call ec_delete (ec, EC_CURRENT(ec))
call ec_nearest (ec, double (wx))
last = 0
}
case 'f': # Fit dispersion function
iferr (call ec_dofit (ec, YES, NO)) {
call erract (EA_WARN)
prfeature = NO
goto beep_
}
case 'g': # Fit shift
call ec_doshift (ec, YES)
prfeature = NO
case 'i': # Initialize
call dgsfree (EC_ECF(ec))
call ecf_setd ("shift", 0.D0)
EC_NEWECF(ec) = YES
EC_NFEATURES(ec) = 0
EC_CURRENT(ec) = 0
EC_NEWFEATURES(ec) = YES
EC_NEWGRAPH(ec) = YES
case 'j': # Go to the previous order
EC_LINE(ec) =
mod (EC_LINE(ec)+EC_NLINES(ec)-2, EC_NLINES(ec)) + 1
EC_AP(ec) = APS(ec,EC_LINE(ec))
EC_ORDER(ec) = ORDERS(ec,EC_LINE(ec))
call ec_gline (ec, EC_LINE(ec))
EC_NEWGRAPH(ec) = YES
EC_CURRENT(ec) = 0
i = ec_next (ec, EC_CURRENT(ec))
case 'k': # Go to the next order
EC_LINE(ec) = mod (EC_LINE(ec), EC_NLINES(ec)) + 1
EC_AP(ec) = APS(ec,EC_LINE(ec))
EC_ORDER(ec) = ORDERS(ec,EC_LINE(ec))
call ec_gline (ec, EC_LINE(ec))
EC_NEWGRAPH(ec) = YES
EC_CURRENT(ec) = 0
i = ec_next (ec, EC_CURRENT(ec))
case 'l': # Find features using a line list
if (EC_ECF(ec) == NULL) {
call eprintf ("Doing initial fit ...\n")
iferr (call ec_dofit (ec, NO, NO)) {
call erract (EA_WARN)
prfeature = NO
goto beep_
}
if (EC_NEWECF(ec) == YES) {
iferr (call ec_fitdata (ec)) {
call erract (EA_WARN)
prfeature = NO
}
call ec_fitfeatures (ec)
EC_NEWECF(ec) = NO
}
}
call eprintf ("Searching coordinate list ...\n")
call ec_linelist (ec)
EC_CURRENT(ec) = 0
i = ec_next (ec, EC_CURRENT(ec))
if (EC_NEWFEATURES(ec) == YES)
EC_NEWGRAPH(ec) = YES
case 'm': # Mark a new feature
fit = wx
pix = ec_fittopix (ec, fit)
pix = ec_center (ec, pix, EC_FWIDTH(ec), EC_FTYPE(ec))
if (IS_INDEFD (pix))
goto beep_
fit = ec_fitpt (ec, EC_AP(ec), pix)
user = fit
call ec_newfeature (ec, EC_AP(ec), pix, fit, user,
EC_FWIDTH(ec), EC_FTYPE(ec))
USER(ec,EC_CURRENT(ec)) = INDEFD
call ec_match (ec, FIT(ec,EC_CURRENT(ec)),
USER(ec,EC_CURRENT(ec)))
call ec_mark (ec, EC_CURRENT(ec))
call printf ("%3d %10.2f %10.8g (%10.8g): ")
call pargi (APN(ec,EC_CURRENT(ec)))
call pargd (PIX(ec,EC_CURRENT(ec)))
call pargd (FIT(ec,EC_CURRENT(ec)))
call pargd (USER(ec,EC_CURRENT(ec)))
call flush (STDOUT)
if (scan() != EOF) {
call gargd (user)
if (nscan() == 1) {
USER(ec,EC_CURRENT(ec)) = user
call ec_match (ec, user, USER(ec,EC_CURRENT(ec)))
}
}
case 'o': # Go to a specified order
call printf ("Aperture (%d): ")
call pargi (EC_AP(ec))
call flush (STDOUT)
if (scan() != EOF) {
call gargi (j)
if (nscan() == 1) {
if (j != EC_AP(ec)) {
iferr {
i = ec_line (ec, j)
call ec_gline (ec, i)
EC_LINE(ec) = i
EC_AP(ec) = j
EC_ORDER(ec) = ORDERS(ec,i)
EC_NEWGRAPH(ec) = YES
EC_CURRENT(ec) = 0
i = ec_next (ec, EC_CURRENT(ec))
} then
goto beep_
}
}
}
case 'p': # Go to pan graph mode
if (EC_GTYPE(ec) == PAN)
goto beep_
EC_GTYPE(ec) = PAN
EC_NEWGRAPH(ec) = YES
case 'q': # Quit
break
case 'r': # Redraw the current graph
EC_NEWGRAPH(ec) = YES
case 's', 'x': # Shift or cross correlate features
# Get coordinate shift.
switch (key) {
case 's':
call printf ("User coordinate (%10.8g): ")
call pargr (wx)
call flush (STDOUT)
if (scan() != EOF) {
call gargd (user)
if (nscan() == 1)
shift = (wx - user) * EC_ORDER(ec)
} else
shift = 0.
case 'x':
if (EC_NFEATURES(ec) > 5) {
call eprintf (
"Cross correlating features with peaks ...\n")
shift = ec_shift (ec)
} else
goto beep_
}
EC_NEWFEATURES(ec) = YES
EC_NEWECF(ec) = YES
EC_NEWGRAPH(ec) = YES
prfeature = NO
if (EC_NFEATURES(ec) < 1) {
call printf ("User coordinate shift=%5f")
call pargd (shift / EC_ORDER(ec))
call ecf_setd ("shift", ecf_getd ("shift") - shift)
goto newkey_
}
# Recenter features.
call eprintf ("Recentering features ...\n")
pix_shift = 0.
z_shift = 0.
nfeatures1 = EC_NFEATURES(ec)
j = 0.
do i = 1, EC_NFEATURES(ec) {
call ec_gline (ec, LINE(ec,i))
pix = ec_fittopix (ec, FIT(ec,i) + shift/ORDER(ec,i))
pix = ec_center (ec, pix, FWIDTH(ec,i), FTYPE(ec,i))
if (IS_INDEFD (pix)) {
if (EC_CURRENT(ec) == i)
EC_CURRENT(ec) = 0
next
}
fit = ec_fitpt (ec, APN(ec,i), pix)
pix_shift = pix_shift + pix - PIX(ec,i)
if (FIT(ec,i) != 0.)
z_shift = z_shift + (fit - FIT(ec,i)) / FIT(ec,i)
j = j + 1
APN(ec,j) = APN(ec,i)
LINE(ec,j) = LINE(ec,i)
ORDER(ec,j) = ORDER(ec,i)
PIX(ec,j) = pix
FIT(ec,j) = FIT(ec,i)
USER(ec,j) = USER(ec,i)
FWIDTH(ec,j) = FWIDTH(ec,i)
FTYPE(ec,j) = FTYPE(ec,i)
if (EC_CURRENT(ec) == i)
EC_CURRENT(ec) = j
}
call ec_gline (ec, EC_LINE(ec))
EC_NFEATURES(ec) = j
if (EC_CURRENT(ec) == 0)
i = ec_next (ec, EC_CURRENT(ec))
if (EC_NFEATURES(ec) < 1) {
call printf ("User coordinate shift=%5f")
call pargd (shift / EC_ORDER(ec))
call printf (", No features found during recentering")
call ecf_setd ("shift", ecf_getd ("shift") - shift)
goto newkey_
}
# Adjust shift.
pix = ecf_getd ("shift")
call ec_doshift (ec, NO)
call ec_fitfeatures (ec)
# Print results.
call printf ("Recentered=%d/%d")
call pargi (EC_NFEATURES(ec))
call pargi (nfeatures1)
call printf (
", pixel shift=%.2f, user shift=%5f, z=%7.3g, rms=%5g")
call pargd (pix_shift / EC_NFEATURES(ec))
call pargd ((pix - ecf_getd ("shift")) / EC_ORDER(ec))
call pargd (z_shift / EC_NFEATURES(ec))
call pargd (ec_rms(ec))
case 't': # Move current feature
if (EC_CURRENT(ec) == 0)
goto beep_
call gseti (EC_GP(ec), G_PLTYPE, 0)
call ec_mark (ec, EC_CURRENT(ec))
pix = ec_fittopix (ec, double (wx))
PIX(ec,EC_CURRENT(ec)) = pix
FIT(ec,EC_CURRENT(ec)) =
ec_fitpt (ec, APN(ec,EC_CURRENT(ec)), pix)
call gseti (EC_GP(ec), G_PLTYPE, 1)
call ec_mark (ec, EC_CURRENT(ec))
EC_NEWFEATURES(ec) = YES
case 'u': # Set uesr coordinate value
if (EC_NFEATURES(ec) == 0)
goto beep_
call printf ("%3d %10.2f %10.8g (%10.8g): ")
call pargi (APN(ec,EC_CURRENT(ec)))
call pargd (PIX(ec,EC_CURRENT(ec)))
call pargd (FIT(ec,EC_CURRENT(ec)))
call pargd (USER(ec,EC_CURRENT(ec)))
call flush (STDOUT)
if (scan() != EOF) {
call gargd (user)
if (nscan() == 1) {
USER(ec,EC_CURRENT(ec)) = user
EC_NEWFEATURES(ec) = YES
}
}
case 'w': # Window graph
call gt_window (EC_GT(ec), EC_GP(ec), "cursor", EC_NEWGRAPH(ec))
case 'y': # Find peaks in order
call malloc (peaks, EC_NPTS(ec), TY_REAL)
npeaks = find_peaks (IMDATA(ec,1), Memr[peaks],
EC_NPTS(ec), 0., int (EC_MINSEP(ec)), 0, EC_MAXFEATURES(ec),
0., false)
for (j = 1; j <= EC_NFEATURES(ec); j = j + 1) {
for (i = 1; i <= npeaks; i = i + 1) {
if (!IS_INDEF(pix)) {
pix = Memr[peaks + i - 1]
if (abs (pix - PIX(ec,j)) < EC_MINSEP(ec))
Memr[peaks + i - 1] = INDEF
}
}
}
for (i = 1; i <= npeaks; i = i + 1) {
pix = Memr[peaks+i-1]
pix = ec_center (ec, pix, EC_FWIDTH(ec), EC_FTYPE(ec))
if (IS_INDEFD (pix))
next
fit = ec_fitpt (ec, EC_AP(ec), pix)
user = INDEFD
call ec_match (ec, fit, user)
call ec_newfeature (ec, EC_AP(ec), pix, fit, user,
EC_FWIDTH(ec), EC_FTYPE(ec))
call ec_mark (ec, EC_CURRENT(ec))
}
call mfree (peaks, TY_REAL)
case 'z': # Go to zoom mode
if (EC_CURRENT(ec) == 0)
goto beep_
if (EC_GTYPE(ec) == PAN)
EC_NEWGRAPH(ec) = YES
EC_GTYPE(ec) = ZOOM
call ec_nearest (ec, double (wx))
case 'I': # Interrupt
call fatal (0, "Interrupt")
default: # Beep
beep_ call printf ("\007\n")
}
newkey_
# Set database update flag if there has been a change.
if ((EC_NEWFEATURES(ec) == YES) || (EC_NEWECF(ec) == YES))
EC_NEWDBENTRY(ec) = YES
# Exit loop and then start new image.
if (newimage[1] != EOS)
break
# Refit the dispersion function if needed.
if (EC_REFIT(ec) == YES) {
iferr (call ec_dofit (ec, NO, NO)) {
call erract (EA_WARN)
prfeature = NO
}
EC_REFIT(ec) = NO
}
# Recompute the coordinate information.
if (EC_NEWECF(ec) == YES) {
iferr (call ec_fitdata (ec)) {
call erract (EA_WARN)
prfeature = NO
}
call ec_fitfeatures (ec)
EC_NEWECF(ec) = NO
}
# Redraw new feature in zoom mode.
if ((EC_GTYPE(ec) == ZOOM) && (last != EC_CURRENT(ec)))
EC_NEWGRAPH(ec) = YES
# Redraw graph.
if (EC_NEWGRAPH(ec) == YES) {
call ec_graph (ec, EC_GTYPE(ec))
EC_NEWGRAPH(ec) = NO
}
# Set cursor and print current feature on status (unless canceled).
if (EC_CURRENT(ec) > 0) {
call gscur (EC_GP(ec), real (FIT(ec,EC_CURRENT(ec))), wy)
if (prfeature == YES) {
call printf ("%d %10.2f %10.8g %10.8g\n")
call pargi (APN(ec,EC_CURRENT(ec)))
call pargd (PIX(ec,EC_CURRENT(ec)))
call pargd (FIT(ec,EC_CURRENT(ec)))
call pargd (USER(ec,EC_CURRENT(ec)))
}
}
last = EC_CURRENT(ec)
} until (clgcur ("cursor", wx, wy, wcs, key, cmd, SZ_LINE) == EOF)
# Warn user that feature data is newer than database entry.
if (EC_NEWDBENTRY(ec) == YES) {
answer = true
if (!clgetb ("autowrite")) {
call printf ("Write feature data to the database (yes)? ")
call flush (STDOUT)
if (scan() != EOF)
call gargb (answer)
}
if (answer)
call ec_dbwrite (ec, Memc[EC_IMAGE(ec)], NO)
}
call flush (STDOUT)
# Free image data and MWCS
call mfree (EC_PIXDATA(ec), TY_DOUBLE)
call mfree (EC_FITDATA(ec), TY_DOUBLE)
call smw_close (MW(EC_SH(ec)))
do i = 1, EC_NLINES(ec)
MW(SH(ec,i)) = NULL
# If a new image was specified by a colon command don't return.
if (newimage[1] != EOS) {
call strcpy (newimage, Memc[EC_IMAGE(ec)], SZ_FNAME)
goto newim_
}
end
|
