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|
.help wphot May00 noao.digiphot.apphot
.ih
NAME
wphot -- perform weighted aperture photometry on a list of stars
.ih
USAGE
wphot image
.ih
PARAMETERS
.ls image
The list of images containing the objects to be measured.
.le
.ls skyfile = ""
The list of text files containing the sky values, of the measured objects,
one object per line with x, y, the sky value, sky sigma, sky skew, number of sky
pixels and number of rejected sky pixels in columns one to seven respectively.
The number of sky files must be zero, one, or equal to the number of input
images. A skyfile value is only requested if \fIfitskypars.salgorithm\fR =
"file" and if WPHOT is run non-interactively.
.le
.ls coords = ""
The list of text files containing initial coordinates for the objects to
be centered. Objects are listed in coords one object per line with the
initial coordinate values in columns one and two. The number of coordinate
files must be zero, one, or equal to the number of images. If coords is
"default", "dir$default", or a directory specification then a coords file name
of the form dir$root.extension.version is constructed, where dir is the
directory, root is the root image name, extension is "coo" and version is
the next available version number for the file.
.le
.ls output = "default"
The name of the results file or results directory. If output is
"default", "dir$default", or a directory specification then an output file name
of the form dir$root.extension.version is constructed, where dir is the
directory, root is the root image name, extension is "omag" and version is
the next available version number for the file. The number of output files
must be zero, one, or equal to the number of image files. In both interactive
and batch mode full output is written to output. In interactive mode
an output summary is also written to the standard output.
.le
.ls plotfile = ""
The name of the file containing radial profile plots of the stars written
to the output file. If plotfile is defined then a radial profile plot
is written to plotfile every time a record is written to \fIoutput\fR.
The user should be aware that this can be a time consuming operation.
.le
.ls datapars = ""
The name of the file containing the data dependent parameters. The critical
parameters \fIfwhmpsf\fR and \fIsigma\fR are located here. If \fIdatapars\fR
is undefined then the default parameter set in uparm directory is used.
.le
.ls centerpars = ""
The name of the file containing the centering parameters. The critical
parameters \fIcalgorithm\fR and \fIcbox\fR are located here.
If \fIcenterpars\fR is undefined then the default parameter set in
uparm directory is used.
.le
.ls fitskypars = ""
The name of the text file containing the sky fitting parameters. The critical
parameters \fIsalgorithm\fR, \fIannulus\fR, and \fIdannulus\fR are located here.
If \fIfitskypars\fR is undefined then the default parameter set in uparm
directory is used.
.le
.ls photpars = ""
The name of the file containing the photometry parameters. The critical
parameter \fIapertures\fR is located here. If \fIphotpars\fR is undefined
then the default parameter set in uparm directory is used.
.le
.ls interactive = yes
Run the task interactively ?
.le
.ls radplots = no
If \fIradplots\fR is "yes" and PHOT is run in interactive mode, a radial
profile of each star is plotted on the screen after the star is measured.
.le
.ls icommands = ""
The image display cursor or image cursor command file.
.le
.ls gcommands = ""
The graphics cursor or graphics cursor command file.
.le
.ls wcsin = ")_.wcsin", wcsout = ")_.wcsout"
The coordinate system of the input coordinates read from \fIcoords\fR and
of the output coordinates written to \fIoutput\fR respectively. The image
header coordinate system is used to transform from the input coordinate
system to the "logical" pixel coordinate system used internally,
and from the internal "logical" pixel coordinate system to the output
coordinate system. The input coordinate system options are "logical", tv",
"physical", and "world". The output coordinate system options are "logical",
"tv", and "physical". The image cursor coordinate system is assumed to
be the "tv" system.
.ls logical
Logical coordinates are pixel coordinates relative to the current image.
The logical coordinate system is the coordinate system used by the image
input/output routines to access the image data on disk. In the logical
coordinate system the coordinates of the first pixel of a 2D image, e.g.
dev$ypix and a 2D image section, e.g. dev$ypix[200:300,200:300] are
always (1,1).
.le
.ls tv
Tv coordinates are the pixel coordinates used by the display servers. Tv
coordinates include the effects of any input image section, but do not
include the effects of previous linear transformations. If the input
image name does not include an image section, then tv coordinates are
identical to logical coordinates. If the input image name does include a
section, and the input image has not been linearly transformed or copied from
a parent image, tv coordinates are identical to physical coordinates.
In the tv coordinate system the coordinates of the first pixel of a
2D image, e.g. dev$ypix and a 2D image section, e.g. dev$ypix[200:300,200:300]
are (1,1) and (200,200) respectively.
.le
.ls physical
Physical coordinates are pixel coordinates invariant with respect to linear
transformations of the physical image data. For example, if the current image
was created by extracting a section of another image, the physical
coordinates of an object in the current image will be equal to the physical
coordinates of the same object in the parent image, although the logical
coordinates will be different. In the physical coordinate system the
coordinates of the first pixel of a 2D image, e.g. dev$ypix and a 2D
image section, e.g. dev$ypix[200:300,200:300] are (1,1) and (200,200)
respectively.
.le
.ls world
World coordinates are image coordinates in any units which are invariant
with respect to linear transformations of the physical image data. For
example, the ra and dec of an object will always be the same no matter
how the image is linearly transformed. The units of input world coordinates
must be the same as those expected by the image header wcs, e. g.
degrees and degrees for celestial coordinate systems.
.le
The wcsin and wcsout parameters default to the values of the package
parameters of the same name. The default values of the package parameters
wcsin and wcsout are "logical" and "logical" respectively.
.le
.le
.ls cache = ")_.cache"
Cache the image pixels in memory. Cache may be set to the value of the apphot
package parameter (the default), "yes", or "no". By default cacheing is
disabled.
.le
.ls verify = ")_.verify"
Verify the critical parameters in non-interactive mode. Verify may be set to
the apphot package parameter value (the default), "yes", or "no".
.le
.ls update = ")_.update"
Update the critical parameters in non-interactive mode if verify is yes.
Update may be set to the apphot package parameter value (the default), "yes",
or "no".
.le
.ls verbose = ")_.verbose"
Print messages on the terminal about actions taken in non-interactive mode.
Verbose may be set to the apphot package parameter value (the default), "yes",
or "no".
.le
.ls graphics = ")_.graphics"
The default graphics device. Graphics may be set to the apphot package
parameter value (the default), "yes", or "no".
.le
.ls display = ")_.display"
The default display device. Graphics may be set to the apphot package
parameter value (the default), "yes", or "no. By default graphics overlay
is disabled. Setting display to one of "imdr", "imdg", "imdb", or "imdy"
enables graphics overlay with the IMD graphics kernel. Setting display to
"stdgraph" enables WPHOT to work interactively from a contour plot.
.le
.ih
DESCRIPTION
WPHOT computes accurate centers, sky values, and weighted magnitudes for a
list of objects in the IRAF image \fIimage\fR whose initial coordinates are read
from the text file \fIcoords\fR or image display cursor, and writes the
computed x and y coordinates, sky values and magnitudes to the text file
\fIoutput\fR.
The coordinates read from \fIcoords\fR are assumed to be in coordinate
system defined by \fIwcsin\fR. The options are "logical", "tv", "physical",
and "world" and the transformation from the input coordinate system to
the internal "logical" system is defined by the image coordinate system.
The simplest default is the "logical" pixel system. Users working on with
image sections but importing pixel coordinate lists generated from the parent
image must use the "tv" or "physical" input coordinate systems.
Users importing coordinate lists in world coordinates, e.g. ra and dec,
must use the "world" coordinate system and may need to convert their
equatorial coordinate units from hours and degrees to degrees and degrees first.
The coordinates written to \fIoutput\fR are in the coordinate
system defined by \fIwcsout\fR. The options are "logical", "tv",
and "physical". The simplest default is the "logical" system. Users
wishing to correlate the output coordinates of objects measured in
image sections or mosaic pieces with coordinates in the parent
image must use the "tv" or "physical" coordinate systems.
If \fIcache\fR is yes and the host machine physical memory and working set size
are large enough, the input image pixels are cached in memory. If cacheing
is enabled and WPHOT is run interactively the first measurement will appear
to take a long time as the entire image must be read in before the measurement
is actually made. All subsequent measurements will be very fast because WPHOT
is accessing memory not disk. The point of cacheing is to speed up random
image access by making the internal image i/o buffers the same size as the
image itself. However if the input object lists are sorted in row order and
sparse cacheing may actually worsen not improve the execution time. Also at
present there is no point in enabling cacheing for images that are less than
or equal to 524288 bytes, i.e. the size of the test image dev$ypix, as the
default image i/o buffer is exactly that size. However if the size of dev$ypix
is doubled by converting it to a real image with the chpixtype task then the
effect of cacheing in interactive is can be quite noticeable if measurements
of objects in the top and bottom halfs of the image are alternated.
In interactive mode the user may either define the list of objects to be
measured interactively with the image cursor or create an object list prior
to entering WPHOT. In either case the user may adjust the centering, sky
fitting and photometry parameters until a satisfactory fit is achieved and
only then store the final results in \fIoutput\fR. In batch
mode the initial positions are read from the text file \fIcoords\fR
or the image cursor parameter \fIicommands\fR is redirected to a text
file containing a list of cursor commands.
.ih
CURSOR COMMANDS
The following list of cursor commands are currently available.
.nf
Interactive Photometry Commands
? Print help
: Colon commands
v Verify the critical parameters
w Store the current parameters
d Plot radial profile of current star
i Interactively set parameters using current star
c Fit center of current star
t Fit sky around the cursor
a Average sky values fit around several cursor positions
s Fit sky around the current star
p Do photometry for current star, using current sky
o Do photometry for current star, using current sky, output results
f Do photometry for current star
spbar Do photometry for current star, output results
m Move to next star in coordinate list
n Do photometry for next star in coordinate list, output results
l Do photometry for remaining stars in coordinate list, output results
r Rewind the coordinate list
e Print error messages
q Exit task
Colon Commands
:show [data/center/sky/fit] Show parameters
:m [n] Move to next [nth] star in the coordinate list
:n [n] Do photometry for next [nth] star in coordinate list, output results
Colon Parameter Editing Commands
# Image and file parameters
:image [string] Image name
:coords [string] Coordinate file name
:output [string] Output file name
# Data dependent parameters
:scale [value] Image scale (units per pixel)
:fwhmpsf [value] Full-width half-maximum of PSF (scale units)
:emission [y/n] Emission features (y), absorption (n)
:sigma [value] Standard deviation of sky (counts)
:datamin [value] Minimum good pixel value (counts)
:datamax [value] Maximum good pixel value (counts)
# Noise parameters
:noise [string] Noise model (constant|poisson)
:gain [string] Gain image header keyword
:ccdread [string] Readout noise image header keyword
:epadu [value] Gain (electrons per adu)
:readnoise [value] Readout noise (electrons)
# Observations parameters
:exposure [string] Exposure time image header keyword
:airmass [string] Airmass image header keyword
:filter [string] Filter image header keyword
:obstime [string] Time of observation image header keyword
:itime [value] Integration time (time units)
:xairmass [value] Airmass value (number)
:ifilter [string] Filter id string
:otime [string] Time of observations (time units)
# Centering algorithm parameters
:calgorithm [string] Centering algorithm
:cbox [value] Width of the centering box (scale units)
:cthreshold [value] Centering intensity threshold (sigma)
:cmaxiter [value] Maximum number of iterations
:maxshift [value] Maximum center shift (scale units)
:minsnratio [value] Minimum S/N ratio for centering
:clean [y/n] Clean subraster before centering
:rclean [value] Cleaning radius (scale units)
:rclip [value] Clipping radius (scale units)
:kclean [value] Clean K-sigma rejection limit (sigma)
# Sky fitting algorithm parameters
:salgorithm [string] Sky fitting algorithm
:skyvalue [value] User supplied sky value (counts)
:annulus [value] Inner radius of sky annulus (scale units)
:dannulus [value] Width of sky annulus (scale units)
:khist [value] Sky histogram extent (+/- sigma)
:binsize [value] Resolution of sky histogram (sigma)
:smooth [y/n] Lucy smooth the sky histogram
:sloclip [value] Low-side clipping factor in percent
:shiclip [value] High-side clipping factor in percent
:smaxiter [value] Maximum number of iterations
:snreject [value] Maximum number of rejection cycles
:sloreject [value] Low-side pixel rejection limits (sky sigma)
:shireject [value] High-side pixel rejection limits (sky sigma)
:rgrow [value] Region growing radius (scale units)
# Photometry parameters
:weighting [string] Weighting function (constant|cone|gauss)
:apertures [string] List of aperture radii (scale units)
:zmag [value] Zero point of magnitude scale
# Plotting and marking parameters
:mkcenter [y/n] Mark computed centers on display
:mksky [y/n] Mark the sky annuli on the display
:mkapert [y/n] Mark apertures on the display
:radplot [y/n] Plot radial profile of object
The following commands are available from inside the interactive setup menu.
Interactive Phot/Wphot Setup Menu
v Mark and verify the critical parameters (f,s,c,a,d,r)
f Mark and verify the full-width half-maximum of psf
s Mark and verify the standard deviation of the background
l Mark and verify the minimum good data value
u Mark and verify the maximum good data value
c Mark and verify the centering box width
n Mark and verify the cleaning radius
p Mark and verify the clipping radius
a Mark and verify the inner radius of the sky annulus
d Mark and verify the width of the sky annulus
g Mark and verify the region growing radius
r Mark and verify the aperture radii
.fi
.ih
ALGORITHMS
WPHOT computes accurate centers for each object using the centering
parameters defined in the CENTERPARS task, computes an accurate sky value
for each object using the sky fitting parameters defined in FITSKYPARS task,
and computes magnitudes using the photometry parameters defined in the
PHOTPARS task. The data dependent parameter are defined in the DATAPARS task.
Three weighting functions are currently supported: constant, cone and gauss.
Constant weighting, the default gives identical results to the PHOT task.
Pixels are weighted by the fraction of their area inside the circular
aperture. For cone and gauss weighting an additional triangular or gaussian
weighting function of full width half maximum equal to \fIfwhmpsf\fR is
applied to the pixels before aperture summing.
This task is currently experimental. Further algorithm work is required.
.ih
OUTPUT
In interactive mode the following quantities are printed on the standard
output as each object is measured. Error is a simple string which
indicates whether the task encountered any errors in the
the centering algorithm, the sky fitting algorithm or the photometry
algorithm. Mag and merr are the magnitudes and errors in
apertures 1 through N respectively and xcenter, ycenter and msky are the
x and y centers and the sky value respectively.
.nf
image xcenter ycenter msky mag[1 ... N] error
.fi
In both interactive and batch mode full output is written to the text file
\fIoutput\fR. At the beginning of each file is a header listing the
current values of the parameters when the first stellar record was written.
These parameters can be subsequently altered. For each star measured the
following record is written
.nf
image xinit yinit id coords lid
xcenter ycenter xshift yshift xerr yerr cier error
msky stdev sskew nsky nsrej sier serror
itime xairmass ifilter otime
rapert sum area flux mag merr pier perr
.fi
Image and coords are the name of the image and coordinate file respectively.
Id and lid are the sequence numbers of stars in the output and coordinate
files respectively. Cier and cerror are the error code and accompanying
error message respectively. Xinit, yinit, xcenter, ycenter, xshift, yshift,
and xerr, yerr are self explanatory and output in pixel units. The sense of
the xshift and yshift definitions is the following.
.nf
xshift = xcenter - xinit
yshift = ycenter - yinit
.fi
Sier and serror are the error code and accompanying error message respectively.
Msky, stdev and sskew are the best estimate of the sky value (per pixel),
standard deviation and skew respectively. Nsky and nsrej are the number of
sky pixels and the number of sky pixels rejected respectively.
Itime is the exposure time, xairmass is self-evident, ifilter is an id
string identifying the filter used during the observation, and otime is
a string specifying the time of the observation in whatever units the
user has defined.
Rapert, sum, area, and flux are the radius of the aperture in pixels, the total
number of counts including sky in the aperture, the area of the aperture
in square pixels, and the total number of counts in the aperture excluding
sky. Mag and merr are the magnitude and error in the magnitude
in the aperture (see below).
.nf
flux = sum - area * msky
mag = zmag - 2.5 * log10 (flux) + 2.5 * log10 (itime)
merr = 1.0857 * error / flux
error = sqrt (flux / epadu + area * stdev**2 +
area**2 * stdev**2 / nsky)
.fi
Pier and perror are photometry error code and accompanying error message.
In interactive mode a radial profile of each measured object is plotted
in the graphics window if \fIradplots\fR is "yes".
In interactive and batchmode a radial profile plot is written to
\fIplotfile\fR if it is defined each time the result of an object
measurement is written to \fIoutput\fR .
.ih
ERRORS
If the object centering was error free then the field cier will be zero.
Non-zero values of cier flag the following error conditions.
.nf
0 # No error
101 # The centering box is off image
102 # The centering box is partially off the image
103 # The S/N ratio is low in the centering box
104 # There are two few points for a good fit
105 # The x or y center fit is singular
106 # The x or y center fit did not converge
107 # The x or y center shift is greater than maxshift
108 # There is bad data in the centering box
.fi
If all goes well during the sky fitting process then the error code sier
will be 0. Non-zero values of sier flag the following error conditions.
.nf
0 # No error
201 # There are no sky pixels in the sky annulus
202 # Sky annulus is partially off the image
203 # The histogram of sky pixels has no width
204 # The histogram of sky pixels is flat or concave
205 # There are too few points for a good sky fit
206 # The sky fit is singular
207 # The sky fit did not converge
208 # The graphics stream is undefined
209 # The file of sky values does not exist
210 # The sky file is at EOF
211 # Cannot read the sky value correctly
212 # The best fit parameter are non-physical
.fi
If no error occurs during the measurement of the magnitudes then pier is
0. Non-zero values of pier flag the following error conditions.
.nf
0 # No error
301 # The aperture is off the image
302 # The aperture is partially off the image
303 # The sky value is undefined
305 # There is bad data in the aperture
.fi
.ih
EXAMPLES
1. Compute the magnitudes for a few stars in dev$ypix using the display
and the image cursor. Setup the task parameters using the interactive
setup menu defined by the i key command and a radial profile plot.
.nf
ap> display dev$ypix 1 fi+
... display the image
ap> wphot dev$ypix
... type ? to print an optional help page
... move the image cursor to a star
... type i to enter the interactive setup menu
... enter maximum radius in pixels of the radial profile or hit
CR to accept the default
... set the fwhmpsf, centering radius, inner and outer sky annuli,
photometry apertures, and sigma using the graphics cursor and the
stellar radial profile plot
... typing <CR> leaves everything at the default value
... type q to quit the setup menu
... type the v key to verify the parameters
... type the w key to save the parameters in the parameter files
... move the image cursor to the stars of interest and tap
the space bar
... a one line summary of the fitted parameters will appear on the
standard output for each star measured
... type q to quit and q again to confirm the quit
... the output will appear in ypix.omag.1
.fi
2. Compute the magnitudes for a few stars in dev$ypix using a contour plot
and the graphics cursor. This option is only useful for those (now very few)
users who have access to a graphics terminal but not to an image display
server. Setup the task parameters using the interactive setup menu defined by
the i key command as in example 1.
.nf
ap> show stdimcur
... record the default value of stdimcur
ap> set stdimcur = stdgraph
... define the image cursor to be the graphics cursor
ap> contour dev$ypix
... make a contour plot of dev$ypix
ap> contour dev$ypix >G ypix.plot1
... store the contour plot of dev$ypix in the file ypix.plot1
ap> wphot dev$ypix display=stdgraph
... type ? to get an optional help page
... move graphics cursor to a star
... type i to enter the interactive setup menu
... enter maximum radius in pixels of the radial profile or CR
to accept the default value
... set the fwhmpsf, centering radius, inner and outer sky annuli,
apertures, and sigma using the graphics cursor and the
stellar radial profile plot
... typing <CR> leaves everything at the default value
... type q to quit the setup menu
... type the v key to verify the critical parameters
... type the w key to save the parameters in the parameter files
... retype :.read ypix.plot1 to reload the contour plot
... move the graphics cursor to the stars of interest and tap
the space bar
... a one line summary of the fitted parameters will appear on the
standard output for each star measured
... type q to quit and q again to verify
... full output will appear in the text file ypix.omag.2
ap> set stdimcur = <default>
... reset stdimcur to its previous value
.fi
3. Setup and run PHOT interactively on a list of objects temporarily
overriding the fwhmpsf, sigma, cbox, annulus, dannulus, and apertures
parameters determined in examples 1 or 2.
.nf
ap> daofind dev$ypix fwhmpsf=2.6 sigma=25.0 verify-
... make a coordinate list
... the output will appear in the text file ypix.coo.1
ap> wphot dev$ypix cbox=7.0 annulus=12.0 dannulus=5.0 \
apertures="3.0,5.0" coords=ypix.coo.1
... type ? for optional help
... move the graphics cursor to the stars and tap space bar
or
... select stars from the input coordinate list with m / :m #
and measure with spbar
... measure stars selected from the input coordinate list
with n / n #
... a one line summary of results will appear on the standard output
for each star measured
... type q to quit and q again to confirm the quit
... the output will appear in ypix.omag.3 ...
.fi
4. Display and measure some stars in an image section and write the output
coordinates in the coordinate system of the parent image.
.nf
ap> display dev$ypix[150:450,150:450] 1
... display the image section
ap> wphot dev$ypix[150:450,150:450] wcsout=tv
... move cursor to stars and type spbar
... type q to quit and q again to confirm quit
... output will appear in ypix.omag.4
ap> pdump ypix.omag.4 xc,yc yes | tvmark 1 STDIN col=204
.fi
5. Run PHOT in batch mode using the coordinate file and the previously
saved parameters. Verify the critical parameters.
.nf
ap> wphot dev$ypix coords=ypix.coo.1 verify+ inter-
... output will appear in ypix.omag.5 ...
.fi
6. Repeat example 5 but assume that the input coordinate are ra and dec
in degrees and degrees, turn off verification, and submit the task to to
the background.
.nf
ap> display dev$ypix 1
ap> rimcursor wcs=world > radec.coo
... move to selected stars and type any key
... type ^Z to quit
ap> wphot dev$ypix coords=radec.coo wcsin=world verify- inter- &
... output will appear in ypix.omag.6
ap> pdump ypix.omag.6 xc,yc yes | tvmark 1 STDIN col=204
... mark the stars on the display
.fi
7. Run PHOT interactively without using the image display.
.nf
ap> show stdimcur
... record the default value of stdimcur
ap> set stdimcur = text
... set the image cursor to the standard input
ap> wphot dev$ypix coords=ypix.coo.1
... type ? for optional help
... type :m 3 to set the initial coordinates to those of the
third star in the list
... type i to enter the interactive setup menu
... enter the maximum radius in pixels for the radial profile or
accept the default with a CR
... type v to enter the default menu
... set the fwhmpsf, centering radius, inner and outer sky annuli,
apertures, and sigma using the graphics cursor and the
stellar radial profile plot
... typing <CR> after the prompt leaves the parameter at its default
value
... type q to quit the setup menu
... type r to rewind the coordinate list
... type l to measure all the stars in the coordinate list
... a one line summary of the answers will appear on the standard
output for each star measured
... type q to quit followed by q to confirm the quit
... full output will appear in the text file ypix.omag.7
ap> set stdimcur = <default>
... reset the value of stdimcur
.fi
8. Use a image cursor command file to drive the PHOT task. The cursor command
file shown below sets the cbox, annulus, dannulus, and apertures parameters
computes the centers, sky values, and magnitudes for 3 stars, updates the
parameter files, and quits the task.
.nf
ap> type cmdfile
: cbox 9.0
: annulus 12.0
: dannulus 5.0
: apertures 5.0
442 410 101 \040
349 188 101 \040
225 131 101 \040
w
q
ap> wphot dev$ypix icommands=cmdfile verify-
... full output will appear in ypix.omag.8
.fi
.ih
BUGS
This task is experimental and requires more work.
It is currently the responsibility of the user to make sure that the
image displayed in the frame is the same as that specified by the image
parameter.
Commands which draw to the image display are disabled by default.
To enable graphics overlay on the image display, set the display
parameter to "imdr", "imdg", "imdb", or "imdy" to get red, green,
blue or yellow overlays and set the centerpars mkcenter switch to
"yes", the fitskypars mksky switch to"yes", or the photpars mkapert
witch to "yes". It may be necessary to run gflush and to redisplay the image
to get the overlays position correctly.
.ih
SEE ALSO
datapars, centerpars, fitskypars, photpars, qphot, phot, polyphot
.endhelp
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