aboutsummaryrefslogtreecommitdiff
path: root/noao/rv/rvvfit.x
blob: d900d9b37ae877f2fa955406ffebaac8549fd06d (plain) (blame)
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
include <gset.h>
include "rvpackage.h"
include "rvflags.h"
include "rvcont.h"

# RV_VERBOSE_FIT - Write a verbose description of the fit and correlation.

procedure rv_verbose_fit (rv, ofd)

pointer	rv				#I RV struct pointer
int	ofd				#I Output file descriptor

pointer	sp, fname
int	fd
int	open()

errchk	mktemp,	open

begin
	if (ofd != STDOUT) {
	    if (RV_VERBOSE(rv) == OF_TXTONLY || 
		RV_VERBOSE(rv) == OF_NOLOG ||
	 	RV_VERBOSE(rv) == OF_STXTONLY) {
	            return
	    }
	}

	# Allocate some space
	call smark (sp)
	call salloc (fname, SZ_PATHNAME, TY_CHAR)

	# Make a temporary file name and open it up
	if (ofd == STDOUT) {
	    call mktemp ("uparm$tmp", Memc[fname], SZ_PATHNAME)
	    iferr (fd = open (Memc[fname], NEW_FILE, TEXT_FILE))
	        call error (0, "Error opening temp file.")

	    call wrt_fit (rv, fd) 		# Start printing it out
	    call close (fd) 			# Close the file

	    # Page the file
	    call gpagefile (RV_GP(rv), Memc[fname], "")
	    call delete (Memc[fname]) 		# Clean up

	} else if (ofd != NULL) {
	    call wrt_fit (rv, ofd)
	    call fprintf (ofd, "\f")
	}

	call sfree (sp)
end


# RV_MEAN_RESID - Compute the median and sigma of the residuals of the fit.

procedure rv_mean_resid (rv, mean, sigma)

pointer	rv				#I RV struct pointer
real	mean				#O Mean of residuals
real	sigma				#O Sigma of residuals

pointer	sp, resx, resy
real	x, y
int	npts, i

real	model()

begin
	if (RV_FITDONE(rv) == NO) {
	    if (RV_INTERACTIVE(rv) == YES)
	        call rv_errmsg ("Error: No fit yet done to the data.")
	    return
	}
	if (RV_FITFUNC(rv) == SINC) {
	    mean = 0.0
	    sigma = 0.0
	    return
	}
	npts = RV_IEND(rv) - RV_ISTART(rv) + 1

	call smark (sp)
	call salloc (resx, npts, TY_REAL)
	call salloc (resy, npts, TY_REAL)

	# Compute the residuals or ratio of the fit
	x =  WRKPIXX(rv,RV_ISTART(rv))
	do i = 1, npts {
	    Memr[resx+i-1] =  x
            if (IS_DBLSTAR(rv) == NO) {
                switch (RV_FITFUNC(rv)) {
                case GAUSSIAN:
                    call cgauss1d (x, 1, COEFF(rv,1), 4, y)
                case LORENTZIAN:
                    call lorentz (x, 1, COEFF(rv,1), 4, y)
                case PARABOLA:
                    call polyfit (x, 1, COEFF(rv,1), 3, y)
                 }
            } else {
                y = model (x, DBL_COEFFS(rv,1), 3*DBL_NSHIFTS(rv)+2)
                y = DBL_SCALE(rv) * y +
                    (DBL_Y1(rv)+DBL_SLOPE(rv)*(x-DBL_X1(rv)))
            }

	    Memr[resy+i-1] = WRKPIXY(rv,i+RV_ISTART(rv)-1) - y
	    x = x + 1.
	}
	call aavgr (Memr[resy], npts, mean, sigma)
		
	call sfree (sp)
end


# WRT_FIT - Write a verbose description of the fit and correlation

procedure wrt_fit (rv, fd)

pointer	rv				#I RV struct pointer
int	fd				#I Tmp file descriptor

pointer	sp, ffunc, orange, rrange, system_id, title
bool	itob()

include "fitcom.com"

begin
	# Allocate some space
	call smark (sp)
	call salloc (ffunc, SZ_FNAME, TY_CHAR)
	call salloc (orange, SZ_LINE, TY_CHAR)
	call salloc (rrange, SZ_LINE, TY_CHAR)
	call salloc (system_id, SZ_LINE, TY_CHAR)
	call salloc (title, 2*SZ_LINE, TY_CHAR)

	# Get those string valued parameters
	call rv_make_range_string (RV_OSAMPLE(rv), Memc[orange])
	call rv_make_range_string (RV_RSAMPLE(rv), Memc[rrange])
	if (IS_DBLSTAR(rv) == NO)
	    call nam_fitfunc (rv, Memc[ffunc])
	else
	    call strcpy ("deblend", Memc[ffunc], SZ_FNAME)
	call sysid (Memc[system_id], SZ_LINE)

	call sprintf (Memc[title], 2*SZ_LINE, "\n%14t%s\n\t   %s\n\n")
	        call pargstr (
		    "Description of Fit to CCF Peak and Cross-Correlation")
		call pargstr (Memc[system_id])
	call fprintf (fd, Memc[title])

	# Write out the image stuff
	#call fprintf (fd, "Obj  = `%.24s[%.4d]'%40tstar = `%.24s'\n")
	call fprintf (fd, "Obj  = `%24s[%.4d]'%40tstar = `%.24s'\n")
	    call pargstr (IMAGE(rv))
	    call pargi (RV_APNUM(rv))
	    call pargstr (OBJNAME(rv))
	#call fprintf (fd, "Temp = `%.24s[%.4d]'%40tstar = `%.24s'\n")
	call fprintf (fd, "Temp = `%24s[%.4d]'%40tstar = `%.24s'\n")
	    call pargstr (RIMAGE(rv))
	    call pargi (RV_APNUM(rv))
	    call pargstr (TEMPNAME(rv))
	call fprintf (fd, "Deltav = %.3f Km/sec%40tTempvel = %.3f Km/sec\n\n")
	    call pargr (RV_DELTAV(rv))
	    call pargr (TEMPVEL(rv,RV_TEMPNUM(rv)))

	# Now do the fitting parameters
	call fprintf (fd, "Fit Parameters:\n")
	call fprintf (fd, "%10tFunction = `%s'%46tWidth = %g\n")
	    call pargstr (Memc[ffunc])
	    call pargr (RV_FITWIDTH(rv))
	call fprintf (fd, "%12tHeight = %g%43tMinwidth = %g\n")
	    call pargr (RV_FITHGHT(rv))
	    call pargr (RV_MINWIDTH(rv))
	call fprintf (fd, "%14tPeak = %g%43tMaxwidth = %g\n")
	    call pargb (itob(RV_PEAK(rv)))
	    call pargr (RV_MAXWIDTH(rv))
	call fprintf (fd, "%11tWeights = %b%41tBackground = %g\n")
	    call pargr (RV_WEIGHTS(rv))
	    call pargr (RV_BACKGROUND(rv))
	call fprintf (fd, "%9tWincenter = %g%45tWindow = %d\n")
	    call pargr (RV_WINCENPAR(rv))
	    call pargr (RV_WINPAR(rv))

	# Write out some more fitting information
	call fprintf (fd, "\n\tNumber of points fit = %d\n")
	    call pargi (nfit)
	if (RV_FITFUNC(rv) != SINC && RV_FITFUNC(rv) != CENTER1D) {
	    call fprintf (fd, "\tNumber of iterations = %d\n")
	        call pargi (niter)
	    call fprintf (fd, "\tNumber of coeffs fit = 1 - %d\n")
	        call pargi (nfitpars)
	    call fprintf (fd, "\tChi Squared of fit = %.4g\n")
	        call pargr (chisqr)
	    call fprintf (fd, "\tFit Coefficients:\n")
	    call wrt_coeffs (rv, fd)
	}

	call rv_mean_resid (rv, mresid, sresid)
	call fprintf (fd, "\n\tMean Residual = %f\n\tSigma of Residuals = %f\n")
	    call pargr (mresid)
	    call pargr (sresid)
	call fprintf (fd, "\tMaximum of cross-correlation is in bin = %d.\n")
	    call pargi (binshift)
	call fprintf (fd, "\tVariance of cross-correlation = %g\n")
	    call pargr (ccfvar)
	call fprintf (fd, "\tHJD of observation = %.5f %50tMJD = %.5f\n")
	    if (RV_DCFLAG(rv) == -1) {
	        call pargd (INDEFD)
	        call pargd (INDEFD)
	    } else {
	        call pargd (RV_HJD(rv))
	        call pargd (RV_MJD_OBS(rv))
	    }
	call fprintf (fd, "\tObject sample used in correlation = `%s'\n")
	    call pargstr (Memc[orange])
	call fprintf (fd, "\tTemplate sample used in correlation = `%s'\n")
	    call pargstr (Memc[rrange])
	call fprintf (fd, "\tTonry&Davis R value = %g\n\n")
	    call pargr (RV_R(rv))

	# Now print out some velocity information
	call fprintf (fd, "Velocity Results:\n")
	call wrt_velocity (rv, fd)

	# Lastly print out any error comments
	call fprintf (fd, "\nComments:\n")
	if (RV_ERRCOMMENTS(rv) != NULL) {
	    call fprintf (fd, "%s\n")
	        call pargstr (ERRCOMMENTS(rv))
	}
	call fprintf (fd, "\n")

	# Clean up
	call flush (fd)
	call sfree (sp)
end


# WRT_VELOCITY - Write out the velocity information.

procedure wrt_velocity (rv, fd)

pointer	rv					#I RV struct pointer
pointer	fd					#I Output file descriptor

int	i
double	rv_shift2vel()

begin
	if (IS_DBLSTAR(rv) == NO) {
	    call fprintf (fd, "\tShift of peak = %.4f pixels\n")
	        call pargr (RV_SHIFT(rv))
	    call fprintf (fd, "\tCorrelation height = %.3f\n")
	        call pargr (RV_HEIGHT(rv))
	    call fprintf (fd, "\tFWHM of peak = %g Km/sec\t(=%g pixels)\n\n")
	        if (RV_DCFLAG(rv) == -1 || IS_INDEF(RV_FWHM(rv)))
	            call pargr (INDEF)
	        else
	            call pargr (RV_FWHM(rv)*RV_DELTAV(rv))
	        call pargr (RV_FWHM(rv))
	    call fprintf (fd, "\tVelocity computed from shift = %.4f Km/sec\n")
	        call pargr (RV_VREL(rv))
	    call fprintf (fd, "\tObserved velocity = %.4f Km/sec\n")
	        call pargd (RV_VOBS(rv))
	    call fprintf (fd,"\tHeliocentric velocity = %.4f +/- %.3f Km/sec\n")
	        call pargd (RV_VCOR(rv))
		if (RV_DCFLAG(rv) != -1)
	            call pargd (RV_ERROR(rv))
		else
	            call pargd (INDEFD)
	} else {
	    call fprintf (fd, "\tShift of peak[1] = %.4f pixels\n")
	        call pargr (DBL_SHIFT(rv,1))
	    do i = 2, DBL_NSHIFTS(rv) {
		call fprintf (fd, "%22t[%d] = %.4f pixels\n")
		    call pargi (i)
		    call pargr (DBL_SHIFT(rv,i))
	    }
	    call fprintf (fd, "\tCorrelation height[1] = %.3f\n")
	        call pargr (DBL_HEIGHT(rv,1))
	    do i = 2, DBL_NSHIFTS(rv) {
		call fprintf (fd, "%27t[%d] = %.3f\n")
		    call pargi (i)
		    call pargr (DBL_HEIGHT(rv,i))
	    }
	    call fprintf (fd, "\tFWHM of peak[1] = %f Km/s\n")
	        call pargr (DBL_FWHM(rv,1))
	    do i = 2, DBL_NSHIFTS(rv) {
		call fprintf (fd, "%21t[%d] = %f Km/s\n")
		    call pargi (i)
		    call pargr (DBL_FWHM(rv,i))
	    }

	    call fprintf (fd, 
		"\n\tVelocity computed from shift[1] = %.4f Km/s\n")
	            call pargd (rv_shift2vel(rv,DBL_SHIFT(rv,1)))
	    do i = 2, DBL_NSHIFTS(rv) {
		call fprintf (fd, "%37t[%d] = %.4f Km/s\n")
		    call pargi (i)
	            call pargd (rv_shift2vel(rv,DBL_SHIFT(rv,i)))
	    }
	    call fprintf (fd, "\tObserved velocity[1] = %.4f Km/s\n")
	        call pargr (DBL_VOBS(rv,1))
	    do i = 2, DBL_NSHIFTS(rv) {
		call fprintf (fd, "%26t[%d] = %.4f Km/s\n")
		    call pargi (i)
		    call pargr (DBL_VOBS(rv,i))
	    }
	    call fprintf(fd,"\tHeliocentric velocity[1] = %.4f +/- %.3f Km/s\n")
	        call pargr (DBL_VHELIO(rv,1))
	        call pargr (DBL_VERR(rv,1))
	    do i = 2, DBL_NSHIFTS(rv) {
		call fprintf (fd, "%30t[%d] = %.4f +/- %.3f Km/s\n")
		    call pargi (i)
		    call pargr (DBL_VHELIO(rv,i))
		    call pargr (DBL_VERR(rv,i))
	    }
	}
	call flush (fd)
end


# WRT_COEFFS - Write the fit coefficients and errors

procedure wrt_coeffs (rv, fd)

pointer	rv					#I RV struct pointer
int	fd					#I File descriptor

begin
	if (fd == NULL)
	    return

	if (IS_DBLSTAR(rv) == YES) {
	    call wrt_debl_coeffs (rv, fd)

	} else if (RV_FITFUNC(rv) == GAUSSIAN || RV_FITFUNC(rv) == LORENTZIAN) {
	    call fprintf (fd, "\t\tc[1] = %8.4f  +/- %6.4f%65t# Amplitude\n")
		call pargr (COEFF(rv,1))
		call pargr (ECOEFF(rv,1))
	    call fprintf (fd, "\t\tc[2] = %8.4f  +/- %6.4f%65t# Center\n")
		call pargr (COEFF(rv,2))
		call pargr (ECOEFF(rv,2))
	    if (RV_FITFUNC(rv) == GAUSSIAN)
	        call fprintf (fd, "\t\tc[3] = %8.4f  +/- %6.4f%65t# Sigma^2\n")
	    else
	        call fprintf (fd, "\t\tc[3] = %8.4f  +/- %6.4f%65t# FWHM\n")
		    call pargr (COEFF(rv,3))
		    call pargr (ECOEFF(rv,3))
	    if (IS_INDEF(RV_BACKGROUND(rv))) {
	        call fprintf (fd, 
		    "\t\tc[4] = %8.4f  +/- %6.4f%65t# Background\n")
		        call pargr (COEFF(rv,4))
		        call pargr (ECOEFF(rv,4))
	    } else {
	        call fprintf (fd, 
		    "\t\tc[4] = %8.4f  (fixed)%65t# Background\n")
		        call pargr (RV_BACKGROUND(rv))
	    }

	} else if (RV_FITFUNC(rv) == PARABOLA) {
	    call fprintf (fd, "\t\tc[1] = %8.4f  +/- %6.4f\n")
		call pargr (COEFF(rv,1))
		call pargr (ECOEFF(rv,1))
	    call fprintf (fd, "\t\tc[2] = %8.4f  +/- %6.4f\n")
		call pargr (COEFF(rv,2))
		call pargr (ECOEFF(rv,2))
	    call fprintf (fd, "\t\tc[3] = %8.4f  +/- %6.4f\n")
		call pargr (COEFF(rv,3))
		call pargr (ECOEFF(rv,3))
	}
	call flush (fd)
end


# WRT_DEBL_COEFFS - Write the fit coefficients and errors for a deblended fit.

procedure wrt_debl_coeffs (rv, fd)

pointer	rv					#I RV struct pointer
int	fd					#I File descriptor

int	i

begin
	if (fd == NULL)
	    return

	call fprintf (fd, "\t\tc[1] = %8.4f %45t# First line position\n")
	    call pargr (DBL_COEFFS(rv,1))
	call fprintf (fd, "\t\tc[2] = %8.4f %45t# First line sigma\n")
	    call pargr (DBL_COEFFS(rv,2))
	do i = 1, DBL_NSHIFTS(rv) {
	    call fprintf (fd, "\t\tc[%d] = %8.4f %45t# Line #%d Amplitude\n")
		call pargi (3*i)
	        call pargr (DBL_COEFFS(rv,3*i))
		call pargi (i)
	    call fprintf (fd, 
		"\t\tc[%d] = %8.4f %45t# Line #%d Center (relative)\n")
		    call pargi (3*i+1)
	            call pargr (DBL_COEFFS(rv,3*i+1))
		    call pargi (i)
	    call fprintf (fd, 
		"\t\tc[%d] = %8.4f %45t# Line #%d Sigma (relative)\n")
		    call pargi (3*i+2)
	            call pargr (DBL_COEFFS(rv,3*i+2))
		    call pargi (i)
	}
	call flush (fd)
end