Replacing test.py

1 files changed, 24 insertions, 0 deletions

diff --git a/scilo_create.py b/scilo_create.py
new file mode 100755
index 0000000..0f84cea
--- /dev/null
+++ b/scilo_create.py
@@ -0,0 +1,24 @@
+#!/usr/bin/env python
+import argparse
+import scilo
+
+def main():
+    parser = argparse.ArgumentParser(description='Generate scientific workflow structure')
+    parser.add_argument('-c', '--copy-only', default=True, action='store_false', required=False,
+                        help='Do not move original data')
+    parser.add_argument('-o', '--output-dir', type=str, required=True,
+                        help='Where to store aggregated data, caches, results')
+    parser.add_argument('input_files', type=str, nargs='*',
+                        help='Example: /path/to/data/*.extension')
+    arguments = parser.parse_args()
+    
+    if not arguments.input_files:
+        print('Please specify files to aggregate')
+        exit(1)
+    
+    dataset = scilo.scilo(arguments.output_dir)
+    dataset.aggregate(arguments.input_files, move=arguments.copy_only)
+
+if __name__ == "__main__":
+    main()
+