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-rwxr-xr-xtest.py25
1 files changed, 25 insertions, 0 deletions
diff --git a/test.py b/test.py
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+#!/usr/bin/env python
+import argparse
+import scilo
+
+def main():
+ parser = argparse.ArgumentParser(description='Generate scientific workflow structure')
+ parser.add_argument('-c', '--copy-only', action='store_true', required=False,
+ help='Do not move original data')
+ parser.add_argument('-o', '--output-dir', type=str, required=True,
+ help='Where to store aggregated data, caches, results')
+ parser.add_argument('input_files', type=str, nargs='*',
+ help='Example: /path/to/data/*.extension')
+ arguments = parser.parse_args()
+
+ if not arguments.input_files:
+ print('Please specify files to aggregate')
+ exit(1)
+
+ dataset = scilo.scilo(arguments.output_dir)
+ for f in arguments.input_files:
+ dataset.aggregate(f, arguments.copy_only)
+
+if __name__ == "__main__":
+ main()
+