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#!/usr/bin/env python
import argparse
import scilo
def main():
parser = argparse.ArgumentParser(description='Generate scientific workflow structure')
parser.add_argument('-c', '--copy-only', default=True, action='store_false', required=False,
help='Do not move original data')
parser.add_argument('-o', '--output-dir', type=str, required=True,
help='Where to store aggregated data, caches, results')
parser.add_argument('input_files', type=str, nargs='*',
help='Example: /path/to/data/*.extension')
arguments = parser.parse_args()
if not arguments.input_files:
print('Please specify files to aggregate')
exit(1)
dataset = scilo.scilo(arguments.output_dir)
dataset.aggregate(arguments.input_files, move=arguments.copy_only)
if __name__ == "__main__":
main()
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