[WIP] Next (#75)

* Purge x.x style selectors

* Add python jinja2 selectors

* Add numpy jinja2 selectors

* Add basic build matrix configuration

* Delete iraf package; see astroconda/astroconda-iraf

* Bump all build revisions

* Remove drizzlepac and nose dependencies

* Fixup dependencies

* Strip newlines in version declaration

* Implements new package versioning scheme

* Revert sandboxing

* Purge old or unnecessary packages

* Clean up meta-packages

* Use fake version

* Minor clean up

* Add missing md5 hashes

* Python is not a dependency of XPA

* Remove GIT_ usage in non-git recipe

* Initial commit of asteval

* cubeviz: sed patching glue/numpy/pytest

* Add missing curly braces

* Remove references to pywcs

* Add mosviz

* Fix up specutils

* Forcefully strip all "v" version prefixes. Please stop using them.

* Fix ginga

* Use PYTHON

* Remove d2to1 dep

* Remove d2to1 dep

* Remove d2to1 dep

* Remove d2to1 dep

* Remove deprecated JWST pipeline packages

* Simplify python builds

* Simplify python builds (windows)

* Remove d2to1 dep

* Remove d2to1 dep

* Stop using 2to3

* Remove ATLAS

* Move sextractor to mainline

* Sextractor Intel MKL integration patches (i.e NO ATLAS)

1 files changed, 283 insertions, 0 deletions

diff --git a/sextractor/sextractor-mkl-gcc.patch b/sextractor/sextractor-mkl-gcc.patch
new file mode 100644
index 0000000..10f07e3
--- /dev/null
+++ b/sextractor/sextractor-mkl-gcc.patch
@@ -0,0 +1,283 @@
+diff -u -p --recursive -N a/sextractor-2.19.5/acx_mkl_gcc.m4 b/sextractor-2.19.5/acx_mkl_gcc.m4
+--- a/sextractor-2.19.5/acx_mkl_gcc.m4	1969-12-31 19:00:00.000000000 -0500
++++ b/sextractor-2.19.5/acx_mkl_gcc.m4	2017-12-30 17:54:54.000000000 -0500
+@@ -0,0 +1,210 @@
++dnl
++dnl				acx_mkl_gcc.m4
++dnl
++dnl Set up options for using the INTEL MKL library.
++dnl
++dnl %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
++dnl
++dnl	This file part of:	AstrOmatic software
++dnl
++dnl	Copyright:		(C) 2003-2013 Emmanuel Bertin -- IAP/CNRS/UPMC
++dnl
++dnl	License:		GNU General Public License
++dnl
++dnl	AstrOmatic software is free software: you can redistribute it and/or
++dnl	modify it under the terms of the GNU General Public License as
++dnl	published by the Free Software Foundation, either version 3 of the
++dnl	License, or (at your option) any later version.
++dnl	AstrOmatic software is distributed in the hope that it will be useful,
++dnl	but WITHOUT ANY WARRANTY; without even the implied warranty of
++dnl	MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
++dnl	GNU General Public License for more details.
++dnl	You should have received a copy of the GNU General Public License
++dnl	along with AstrOmatic software.
++dnl	If not, see <http://www.gnu.org/licenses/>.
++dnl
++dnl	Last modified:		17/04/2013
++dnl
++dnl %%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
++dnl
++dnl @synopsis ACX_MKL_GCC([MKL_DIR, ILP64_FLAG, STATIC_FLAG, CONV_LIBS])
++dnl
++dnl This macro sets the MKL_CFLAGS, MKL_LDFLAGS and MKL_LIBS variables to
++dnl for compiling and linking with INTEL's MKL. A coma-separated list of
++dnl convenience libraries may be included in the linked group for static linking.
++dnl You may wish to use these variables in your default CFLAGS:
++dnl
++dnl        CFLAGS="$CFLAGS $MKL_CFLAGS"
++dnl
++dnl You may wish to use these variables in your default LDFLAGS:
++dnl
++dnl        LDFLAGS="$LDFLAGS $MKL_LDLAGS"
++dnl
++dnl You may wish to use these variables in your default LIBS:
++dnl
++dnl        LIBS="$LIBS $MKL_LIBS"
++dnl
++
++AC_DEFUN([ACX_MKL_GCC], [
++AC_REQUIRE([AC_CANONICAL_HOST])
++
++dnl ------------------------
++dnl Set MKL's root directory
++dnl ------------------------
++
++if test x$1 = x; then
++  mklroot=${MKLROOT}
++else
++  mklroot=$1
++fi
++
++dnl -----------------------------
++dnl Include convenience libraries
++dnl -----------------------------
++
++if test x$4 = x; then
++  startgroup="-Wl,--start-group"
++else
++  startgroup="-Wl,--start-group,$4"
++fi
++
++dnl ----------------------
++dnl Set architecture flags
++dnl ----------------------
++
++dnl check if GCC (or clang... it doesn't matter here) compiler is present
++gcc --version 2>&1 | egrep -i "gcc|clang" > /dev/null 2>&1 && flaggcc=yes
++
++# Meh.
++flag64=yes
++
++dnl check if the platform is OSX
++sw_vers 2>&1 | grep -i "ProductVersion" > /dev/null 2>&1 && flagosx=yes
++
++dnl ----------------------
++dnl Exit if INTEL compiler is not found
++dnl ----------------------
++if test x$flaggcc = x; then
++  AC_SUBST(MKL_CFLAGS, "")
++  AC_SUBST(MKL_LDFLAGS, "")
++  AC_SUBST(MKL_LIBS, "")
++  MKL_WARN="GCC compiler not detected"
++  AC_SUBST(MKL_WARN)
++  exit
++fi
++
++if test x$flagosx = xyes; then
++dnl MacOSX
++  if test x$flag64 = xyes; then
++dnl INTEL compiler uses Intel64 architecture
++    if test x$2 = xyes; then
++dnl 64 bit pointers
++      AC_SUBST(MKL_CFLAGS, "-fopenmp -DMKL_ILP64 -I$mklroot/include")
++      if test x$3 = xyes; then
++dnl Static linking
++        AC_SUBST(MKL_LIBS, ["$mklroot/lib/libmkl_intel_ilp64.a \
++		$mklroot/lib/libmkl_intel_thread.a \
++		$mklroot/lib/libmkl_core.a -lpthread -lm"])
++      else
++dnl Dynamic linking
++        AC_SUBST(MKL_LIBS, "-L$mklroot/lib  -lmkl_intel_ilp64 \
++	-lmkl_intel_thread -lmkl_core -lpthread -lm")
++      fi
++    else
++dnl 32 bit pointers
++      AC_SUBST(MKL_CFLAGS, "-fopenmp -I$mklroot/include")
++      if test x$3 = xyes; then
++dnl Static linking
++        AC_SUBST(MKL_LIBS, ["$mklroot/lib/libmkl_intel_lp64.a \
++		$mklroot/lib/libmkl_intel_thread.a \
++		$mklroot/lib/libmkl_core.a -lpthread -lm"])
++      else
++dnl Dynamic linking
++        AC_SUBST(MKL_LIBS, "-L$mklroot/lib -lmkl_intel_lp64 \
++		-lmkl_intel_thread -lmkl_core -lpthread -lm")
++      fi
++    fi
++  else
++dnl INTEL compiler uses IA32 architecture
++    AC_SUBST(MKL_CFLAGS, "-fopenmp -I$mklroot/include")
++    if test x$3 = xyes; then
++dnl Static linking
++    AC_SUBST(MKL_LIBS, ["$mklroot/lib/libmkl_intel.a \
++	$mklroot/lib/libmkl_intel_thread.a \
++	$mklroot/lib/libmkl_core.a -lpthread -lm"])
++    else
++dnl Dynamic linking
++      AC_SUBST(MKL_LIBS, "-L$mklroot/lib -lmkl_intel -lmkl_intel_thread \
++	-lmkl_core -lpthread -lm")
++    fi
++  fi
++else
++dnl Linux
++  if test x$flag64 = xyes; then
++dnl INTEL compiler uses Intel64 architecture
++    if test x$2 = xyes; then
++dnl 64 bit pointers
++      AC_SUBST(MKL_CFLAGS, "-fopenmp -DMKL_ILP64 -I$mklroot/include")
++      if test x$3 = xyes; then
++dnl Static linking
++      AC_SUBST(MKL_LIBS,
++	["$startgroup,$mklroot/lib/intel64/libmkl_intel_ilp64.a,\
++$mklroot/lib/intel64/libmkl_intel_thread.a,\
++$mklroot/lib/intel64/libmkl_core.a,-end-group -lpthread -lm"])
++      else
++dnl Dynamic linking
++        AC_SUBST(MKL_LIBS, "-L$mklroot/lib/intel64  -lmkl_intel_ilp64 \
++		-lmkl_intel_thread -lmkl_core -lpthread -lm")
++      fi
++    else
++dnl 32 bit pointers
++      AC_SUBST(MKL_CFLAGS, "-fopenmp -I$mklroot/include")
++      if test x$3 = xyes; then
++dnl Static linking
++        AC_SUBST(MKL_LIBS,
++		["$startgroup,$mklroot/lib/intel64/libmkl_intel_lp64.a,\
++$mklroot/lib/intel64/libmkl_intel_thread.a,\
++$mklroot/lib/intel64/libmkl_core.a,--end-group -lpthread -lm"])
++      else
++dnl Dynamic linking
++        AC_SUBST(MKL_LIBS, "-L$mklroot/lib/intel64 -lmkl_intel_lp64 \
++	-lmkl_intel_thread -lmkl_core -lpthread -lm")
++      fi
++    fi
++  else
++dnl INTEL compiler uses IA32 architecture
++    AC_SUBST(MKL_CFLAGS, "-fopenmp -I$mklroot/include")
++    if test x$3 = xyes; then
++dnl Static linking
++      AC_SUBST(MKL_LIBS, ["$startgroup,$mklroot/lib/ia32/libmkl_intel.a,\
++$mklroot/lib/ia32/libmkl_intel_thread.a,\
++$mklroot/lib/ia32/libmkl_core.a,--end-group -lpthread -lm"])
++    else
++dnl Dynamic linking
++      AC_SUBST(MKL_LIBS, "-L$mklroot/lib/ia32 -lmkl_intel -lmkl_intel_thread \
++	-lmkl_core -lpthread -lm")
++    fi
++  fi
++fi
++
++AC_SUBST(MKL_LDFLAGS, "")
++
++dnl --------------------
++dnl Set internal flags
++dnl --------------------
++
++AC_DEFINE(HAVE_MKL,1, [Define if you have the MKL libraries.])
++AC_DEFINE(HAVE_FFTW,1, [Define if you have the FFTW libraries.])
++AC_DEFINE(HAVE_LAPACK,1, [Define if you have the LAPACK libraries.])
++AC_DEFINE(HAVE_LAPACKE,1, [Define if you have the LAPACKe libraries.])
++
++dnl --------------------
++dnl Set include files
++dnl --------------------
++
++AC_DEFINE_UNQUOTED(MKL_H, "mkl.h", [MKL header filename.])
++AC_DEFINE_UNQUOTED(FFTW_H, "fftw/fftw3_mkl.h", [FFTW header filename.])
++AC_DEFINE_UNQUOTED(LAPACK_H, "mkl_lapack.h", [LAPACK header filename.])
++AC_DEFINE_UNQUOTED(LAPACKE_H, "mkl_lapacke.h", [LAPACKe header filename.])
++
++])dnl ACX_MKL_GCC
+diff -u -p --recursive -N a/sextractor-2.19.5/configure.ac b/sextractor-2.19.5/configure.ac
+--- a/sextractor-2.19.5/configure.ac	2013-12-14 12:12:32.000000000 -0500
++++ b/sextractor-2.19.5/configure.ac	2017-12-30 16:37:44.000000000 -0500
+@@ -48,6 +48,7 @@ AC_SUBST(DATE3, "$date3")
+ sinclude(acx_atlas.m4)
+ sinclude(acx_fftw.m4)
+ sinclude(acx_mkl.m4)
++sinclude(acx_mkl_gcc.m4)
+ sinclude(acx_prog_cc_optim.m4)
+ sinclude(acx_pthread.m4)
+ sinclude(acx_urbi_resolve_dir.m4)
+@@ -79,12 +80,21 @@ AC_ARG_ENABLE(icc,
+ AC_MSG_CHECKING([whether we should use INTEL's MKL])
+ AC_ARG_ENABLE(mkl,
+ 	[AS_HELP_STRING([--enable-mkl],
+-	[Use INTEL's MKL for solvers and FFTs (off by default)])],
++	[Use INTEL MKL for solvers and FFTs (off by default)])],
+         enable_icc="yes"
+         CC="icc"
+ 	AC_MSG_RESULT([yes]),
+ 	AC_MSG_RESULT([no]))
+ 
++AC_MSG_CHECKING([whether we should use INTEL MKL with gcc])
++AC_ARG_ENABLE(mkl_gcc,
++	[AS_HELP_STRING([--enable-mkl-gcc],
++	[Use INTEL MKL for solvers and FFTs (off by default)])],
++        enable_mkl_gcc="yes"
++        CC="gcc"
++	AC_MSG_RESULT([yes]),
++	AC_MSG_RESULT([no]))
++
+ # Checks for programs.
+ AC_LANG(C)
+ 
+@@ -105,7 +115,7 @@ AC_HEADER_STDC
+ AC_CHECK_HEADERS([fcntl.h limits.h malloc.h stdlib.h string.h sys/mman.h \
+ 		sys/types.h unistd.h])
+ # Checks for INTEL math header files.
+-if test x$enable_icc = xyes; then
++if test x$enable_icc = xyes || test x$enable_mkl_gcc = xyes; then
+   AC_CHECK_HEADERS(mathimf.h)
+ fi
+ 
+@@ -226,9 +236,14 @@ AM_CONDITIONAL(USE_THREADS, [test x$use_
+ if test x$enable_model_fitting != xno; then
+   AC_DEFINE(USE_MODEL, 1, [Triggers model-fitting])
+ ############ handle the INTEL MKL library (FFTW + LAPACK) ###########
+-  if test x$enable_mkl = xyes; then
++  if test x$enable_mkl = xyes || test x$enable_mkl_gcc = xyes; then
+     convlibs="${srcdir}/wcs/libwcs_c.a,${srcdir}/levmar/liblevmar.a"
+-    ACX_MKL($with_mkl_dir,,$enable_best_link,$convlibs)
++    if test x$enable_mkl_gcc = xyes; then
++        ACX_MKL_GCC($with_mkl_dir,,$enable_best_link,$convlibs)
++    else
++        ACX_MKL($with_mkl_dir,,$enable_best_link,$convlibs)
++    fi
++
+     if test x$MKL_WARN != x; then
+       AC_MSG_WARN([$MKL_WARN])
+     fi
+@@ -256,7 +271,7 @@ AM_CONDITIONAL(USE_MODEL, [test x$enable
+ 
+ # Compile with profiling option
+ if test x$enable_profiling = xyes; then
+-  if test x$enable_icc = xyes; then
++  if test x$enable_icc = xyes || test x$enable_mkl_gcc = xyes; then
+     AM_CFLAGS="$AM_CFLAGS -pq"
+   else
+     AM_CFLAGS="$AM_CFLAGS -pg"