JWSTDP-1.13.3 (#162)

5 files changed, 313 insertions, 0 deletions

diff --git a/jwstdp/1.13.3/README.md b/jwstdp/1.13.3/README.md
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+# Installing the tested pipeline stack
+
+Conda (miniconda3 or anaconda3) must already be installed, if it is not,
+'Advance Setup' below.
+All steps must be performed in bash or a compatible shell.
+
+A fresh installation of Anaconda3 or Miniconda3 is not required for each JWSTDP
+release. The method described here allows for multiple, entirely segregated,
+pipeline installations.
+
+## Linux
+To reproduce the environment used during JWST prerelease testing on Linux, a 
+three-step installation process is required.
+
+1) Install the target python interpreter and its dependencies using conda, then
+```
+$ conda create -n jwstdp-1.13.3 --file
+https://ssb.stsci.edu/releases/jwstdp/1.13.3/conda_python_stable-deps.txt
+```
+
+2) Activate the environment
+```
+$ source activate jwstdp-1.13.3
+```
+
+3) Install the pipeline software packages on top using `pip`:
+```
+$ pip install -r https://ssb.stsci.edu/releases/jwstdp/1.13.3/reqs_stable-deps.txt
+```
+
+## Macos
+To reproduce the environment used during JWST prerelease testing on Linux, a 
+three-step installation process is required.
+
+1) Install the target python interpreter and its dependencies using conda, then
+```
+$ conda create -n jwstdp-1.13.3 --file
+https://ssb.stsci.edu/releases/jwstdp/1.13.3/conda_python_macos-stable-deps.txt
+```
+
+2) Activate the environment
+```
+$ source activate jwstdp-1.13.3
+```
+
+3) Install the pipeline software packages on top using `pip`:
+```
+$ pip install -r https://ssb.stsci.edu/releases/jwstdp/1.13.3/reqs_macos-stable-deps.txt
+```
+
+# Advance setup
+ 
+If conda has not yet been installed, use the following steps to obtain
+it, then use the procedure above to install the pipeline software.
+
+For detailed instructions of this step, please visit: http://docs.continuum.io/anaconda/install#linux-install
+
+**For Miniconda:**
+
+```
+$ wget
+https://repo.continuum.io/miniconda/Miniconda3-Latest-Linux-x86_64.sh
+$ bash Miniconda3-Latest-Linux-x86_64.sh
+$ export PATH=$HOME/miniconda3/bin:$PATH
+```
+
+**For Anaconda (if preferred):**
+
+```
+$ wget
+https://repo.continuum.io/archive/Anaconda3-2019.10-Linux-x86_64.sh
+$ bash Anaconda3-2019.10-Linux-x86_64.sh
+$ export PATH=$HOME/anaconda3/bin:$PATH
+```
diff --git a/jwstdp/1.13.3/conda_python_macos-stable-deps.txt b/jwstdp/1.13.3/conda_python_macos-stable-deps.txt
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--- /dev/null
+++ b/jwstdp/1.13.3/conda_python_macos-stable-deps.txt
@@ -0,0 +1,20 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: osx-64
+# conda version: 22.11.1
+@EXPLICIT
+https://repo.anaconda.com/pkgs/main/osx-64/bzip2-1.0.8-h1de35cc_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/ca-certificates-2023.12.12-hecd8cb5_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/libffi-3.4.4-hecd8cb5_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/ncurses-6.4-hcec6c5f_0.conda
+https://repo.anaconda.com/pkgs/main/noarch/tzdata-2023c-h04d1e81_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/xz-5.4.5-h6c40b1e_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/zlib-1.2.13-h4dc903c_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/openssl-3.0.12-hca72f7f_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/readline-8.2-hca72f7f_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/tk-8.6.12-h5d9f67b_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/sqlite-3.41.2-h6c40b1e_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/python-3.11.5-hf27a42d_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/setuptools-68.2.2-py311hecd8cb5_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/wheel-0.41.2-py311hecd8cb5_0.conda
+https://repo.anaconda.com/pkgs/main/osx-64/pip-23.3.1-py311hecd8cb5_0.conda
diff --git a/jwstdp/1.13.3/conda_python_stable-deps.txt b/jwstdp/1.13.3/conda_python_stable-deps.txt
new file mode 100644
index 0000000..78ac85a
--- /dev/null
+++ b/jwstdp/1.13.3/conda_python_stable-deps.txt
@@ -0,0 +1,27 @@
+# This file may be used to create an environment using:
+# $ conda create --name <env> --file <this file>
+# platform: linux-64
+# conda version: 22.11.1
+@EXPLICIT
+https://repo.anaconda.com/pkgs/main/linux-64/_libgcc_mutex-0.1-main.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ca-certificates-2023.12.12-h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ld_impl_linux-64-2.38-h1181459_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libstdcxx-ng-11.2.0-h1234567_1.conda
+https://repo.anaconda.com/pkgs/main/noarch/tzdata-2023c-h04d1e81_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libgomp-11.2.0-h1234567_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/_openmp_mutex-5.1-1_gnu.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libgcc-ng-11.2.0-h1234567_1.conda
+https://repo.anaconda.com/pkgs/main/linux-64/bzip2-1.0.8-h7b6447c_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libffi-3.4.4-h6a678d5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/libuuid-1.41.5-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/ncurses-6.4-h6a678d5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/openssl-3.0.12-h7f8727e_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/xz-5.4.5-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/zlib-1.2.13-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/readline-8.2-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/tk-8.6.12-h1ccaba5_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/sqlite-3.41.2-h5eee18b_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/python-3.11.5-h955ad1f_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/setuptools-68.2.2-py311h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/wheel-0.41.2-py311h06a4308_0.conda
+https://repo.anaconda.com/pkgs/main/linux-64/pip-23.3.1-py311h06a4308_0.conda
diff --git a/jwstdp/1.13.3/reqs_macos-stable-deps.txt b/jwstdp/1.13.3/reqs_macos-stable-deps.txt
new file mode 100644
index 0000000..6c50695
--- /dev/null
+++ b/jwstdp/1.13.3/reqs_macos-stable-deps.txt
@@ -0,0 +1,96 @@
+alabaster==0.7.13
+asdf==3.0.1
+asdf-astropy==0.5.0
+asdf-coordinates-schemas==0.2.0
+asdf-standard==1.0.3
+asdf-transform-schemas==0.4.0
+asdf-unit-schemas==0.1.0
+asdf-wcs-schemas==0.3.0
+astropy==6.0.0
+astropy-iers-data==0.2024.1.1.0.33.39
+attrs==23.2.0
+Babel==2.14.0
+BayesicFitting==3.2.0
+certifi==2023.11.17
+charset-normalizer==3.3.2
+ci-watson==0.6.2
+colorama==0.4.6
+contourpy==1.2.0
+coverage==7.4.0
+crds==11.17.14
+cycler==0.12.1
+docutils==0.20.1
+drizzle==1.14.4
+et-xmlfile==1.1.0
+filelock==3.13.1
+fonttools==4.47.0
+future==0.18.3
+gwcs==0.20.0
+idna==3.6
+imageio==2.33.1
+imagesize==1.4.1
+importlib-metadata==7.0.1
+iniconfig==2.0.0
+Jinja2==3.1.2
+jmespath==1.0.1
+jplephem==2.21
+jsonschema==4.20.0
+jsonschema-specifications==2023.12.1
+jwst @ git+https://github.com/spacetelescope/jwst.git@1.13.3
+kiwisolver==1.4.5
+lazy_loader==0.3
+lxml==5.0.0
+MarkupSafe==2.1.3
+matplotlib==3.8.2
+networkx==3.2.1
+numpy==1.26.3
+numpydoc==1.6.0
+opencv-python-headless==4.9.0.80
+openpyxl==3.1.2
+packaging==23.2
+Parsley==1.3
+photutils==1.10.0
+pillow==10.2.0
+pluggy==1.3.0
+poppy==1.1.1
+psutil==5.9.7
+pyerfa==2.0.1.1
+Pygments==2.17.2
+pyparsing==3.1.1
+pysiaf==0.21.0
+pytest==7.4.4
+pytest-cov==4.1.0
+pytest-doctestplus==1.1.0
+python-dateutil==2.8.2
+PyYAML==6.0.1
+readchar==4.0.5
+referencing==0.32.0
+requests==2.31.0
+requests-mock==1.11.0
+rpds-py==0.16.2
+ruff==0.1.11
+scikit-image==0.22.0
+scipy==1.11.4
+semantic-version==2.10.0
+six==1.16.0
+snowballstemmer==2.2.0
+spherical-geometry==1.3.1
+Sphinx==7.2.6
+sphinxcontrib-applehelp==1.0.7
+sphinxcontrib-devhelp==1.0.5
+sphinxcontrib-htmlhelp==2.0.4
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.6
+sphinxcontrib-serializinghtml==1.1.9
+stcal==1.5.2
+stdatamodels==1.9.0
+stpipe==0.5.1
+stsci.image==2.3.5
+stsci.imagestats==1.8.0
+stsci.stimage==0.2.6
+tabulate==0.9.0
+tifffile==2023.12.9
+tweakwcs==0.8.5
+urllib3==2.1.0
+wiimatch==0.3.2
+zipp==3.17.0
diff --git a/jwstdp/1.13.3/reqs_stable-deps.txt b/jwstdp/1.13.3/reqs_stable-deps.txt
new file mode 100644
index 0000000..6c50695
--- /dev/null
+++ b/jwstdp/1.13.3/reqs_stable-deps.txt
@@ -0,0 +1,96 @@
+alabaster==0.7.13
+asdf==3.0.1
+asdf-astropy==0.5.0
+asdf-coordinates-schemas==0.2.0
+asdf-standard==1.0.3
+asdf-transform-schemas==0.4.0
+asdf-unit-schemas==0.1.0
+asdf-wcs-schemas==0.3.0
+astropy==6.0.0
+astropy-iers-data==0.2024.1.1.0.33.39
+attrs==23.2.0
+Babel==2.14.0
+BayesicFitting==3.2.0
+certifi==2023.11.17
+charset-normalizer==3.3.2
+ci-watson==0.6.2
+colorama==0.4.6
+contourpy==1.2.0
+coverage==7.4.0
+crds==11.17.14
+cycler==0.12.1
+docutils==0.20.1
+drizzle==1.14.4
+et-xmlfile==1.1.0
+filelock==3.13.1
+fonttools==4.47.0
+future==0.18.3
+gwcs==0.20.0
+idna==3.6
+imageio==2.33.1
+imagesize==1.4.1
+importlib-metadata==7.0.1
+iniconfig==2.0.0
+Jinja2==3.1.2
+jmespath==1.0.1
+jplephem==2.21
+jsonschema==4.20.0
+jsonschema-specifications==2023.12.1
+jwst @ git+https://github.com/spacetelescope/jwst.git@1.13.3
+kiwisolver==1.4.5
+lazy_loader==0.3
+lxml==5.0.0
+MarkupSafe==2.1.3
+matplotlib==3.8.2
+networkx==3.2.1
+numpy==1.26.3
+numpydoc==1.6.0
+opencv-python-headless==4.9.0.80
+openpyxl==3.1.2
+packaging==23.2
+Parsley==1.3
+photutils==1.10.0
+pillow==10.2.0
+pluggy==1.3.0
+poppy==1.1.1
+psutil==5.9.7
+pyerfa==2.0.1.1
+Pygments==2.17.2
+pyparsing==3.1.1
+pysiaf==0.21.0
+pytest==7.4.4
+pytest-cov==4.1.0
+pytest-doctestplus==1.1.0
+python-dateutil==2.8.2
+PyYAML==6.0.1
+readchar==4.0.5
+referencing==0.32.0
+requests==2.31.0
+requests-mock==1.11.0
+rpds-py==0.16.2
+ruff==0.1.11
+scikit-image==0.22.0
+scipy==1.11.4
+semantic-version==2.10.0
+six==1.16.0
+snowballstemmer==2.2.0
+spherical-geometry==1.3.1
+Sphinx==7.2.6
+sphinxcontrib-applehelp==1.0.7
+sphinxcontrib-devhelp==1.0.5
+sphinxcontrib-htmlhelp==2.0.4
+sphinxcontrib-jsmath==1.0.1
+sphinxcontrib-qthelp==1.0.6
+sphinxcontrib-serializinghtml==1.1.9
+stcal==1.5.2
+stdatamodels==1.9.0
+stpipe==0.5.1
+stsci.image==2.3.5
+stsci.imagestats==1.8.0
+stsci.stimage==0.2.6
+tabulate==0.9.0
+tifffile==2023.12.9
+tweakwcs==0.8.5
+urllib3==2.1.0
+wiimatch==0.3.2
+zipp==3.17.0