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authorJoseph Hunkeler <jhunkeler@gmail.com>2019-05-21 14:47:45 -0400
committerJoseph Hunkeler <jhunkeler@gmail.com>2019-05-21 14:47:45 -0400
commitfaa81e94ae2930a794e1ab1bab320b33e206abeb (patch)
tree1aea73fd256f2871f44c19253d25cb5e2ea4517f
parentfe73a9d176f502feb454fde8c328d5ed761f50ff (diff)
downloaddm-faa81e94ae2930a794e1ab1bab320b33e206abeb.tar.gz
Can perform merge and dump
-rw-r--r--source/app.d76
-rw-r--r--source/conda.d40
-rw-r--r--source/merge.d63
3 files changed, 132 insertions, 47 deletions
diff --git a/source/app.d b/source/app.d
index 603ff5b..cbb90e3 100644
--- a/source/app.d
+++ b/source/app.d
@@ -3,43 +3,97 @@ import std.array;
import std.format;
import std.file;
import std.typecons;
+import std.path : buildPath, chainPath, absolutePath;
import conda;
import merge;
int main(string[] args) {
+ import std.getopt;
+ string env_name;
+ string output_dir = "delivery";
+ string installer_prefix = "miniconda";
+ string installer_version = "4.5.12";
+ bool run_tests = false;
+ string mergefile;
+ string base_spec;
+
+ auto helpInformation = getopt(
+ args,
+ config.passThrough,
+ config.required, "env-name|n", "name of delivery", &env_name,
+ config.required, "dmfile|d", "delivery merge specification file", &mergefile,
+ "output-dir|o", "store delivery-related results in dir", &output_dir,
+ "install-prefix|p", "path to install miniconda", &installer_prefix,
+ "install-version|i", "version of miniconda installer", &installer_version,
+ "run-tests|R", "scan merged packages and execute their tests", &run_tests,
+ "base-spec", "conda explicit or yaml environment dump", &base_spec
+ );
+
+ if (helpInformation.helpWanted) {
+ defaultGetoptPrinter("Delivery merge [fill in the blanks]",
+ helpInformation.options);
+ return 0;
+ }
+
+ installer_prefix = buildPath(installer_prefix).absolutePath;
+ output_dir = buildPath(output_dir, env_name).absolutePath;
+ mergefile = buildPath(mergefile).absolutePath;
+
+ // Ingest the dump file via --base-spec or with a positional argument.
+ if (base_spec.empty && args.length > 1) {
+ base_spec = args[1];
+ args.popBack();
+ }
+
+ /*
+ string optfmt = "env_name: %s\n"
+ ~ "output_dir: %s\n"
+ ~ "installer_prefix: %s\n"
+ ~ "installer_version: %s\n"
+ ~ "run_tests: %d\n"
+ ~ "mergefile: %s\n"
+ ~ "base_spec: %s\n"
+ ~ "ARGS: %s\n";
+ writefln(optfmt, env_name, output_dir, installer_prefix, installer_version,
+ run_tests, mergefile, base_spec, args);
+ */
+
Conda conda = new Conda();
conda.channels = [
"http://ssb.stsci.edu/astroconda",
"defaults",
"http://ssb.stsci.edu/astroconda-dev"
];
- conda.install_prefix = "/tmp/miniconda";
- conda.installer_version = "4.5.12";
+ conda.install_prefix = installer_prefix;
+ conda.installer_version = installer_version;
conda.installer_variant = "3";
if (!conda.installer()) {
writeln("Installation failed.");
return 1;
}
conda.initialize();
+ if (!env_combine(conda, env_name, base_spec, mergefile)) {
+ writeln("Delivery merge failed. Adjust '*.dm' file to match constraints reported by the 'solver'.");
+ return 1;
+ }
+
+ if (!output_dir.exists) {
+ output_dir.mkdirRecurse;
+ }
+ writeln(conda.dump_env_yaml(buildPath(output_dir, env_name ~ ".yml")));
+ writeln(conda.dump_env_explicit(buildPath(output_dir, env_name ~ ".txt")));
+
auto info = testable_packages(conda, "test.dm");
writeln(info);
/*
- env_combine(conda,
- "delivery",
- "https://raw.githubusercontent.com/astroconda/astroconda-releases/master/hstdp/2019.3/dev/hstdp-2019.3-linux-py36.02.txt",
- "test.dm");
- conda.run("info");
- conda.run("list");
- */
-
- /*
conda.activate("base");
conda.run("info");
conda.sh("python --version");
conda.sh("python -c 'import sys; print(sys.path)'");
*/
+
/*
conda.sh("git clone https://github.com/spacetelescope/tweakwcs");
auto project = "tweakwcs";
diff --git a/source/conda.d b/source/conda.d
index 6fb7bd1..6dc66e6 100644
--- a/source/conda.d
+++ b/source/conda.d
@@ -147,7 +147,7 @@ class Conda {
bool installer() {
if (this.in_env() || this.install_prefix.exists) {
- writefln("Conda is already installed: %s", this.install_prefix);
+ writefln("Miniconda is already installed: %s", this.install_prefix);
return true;
} else if (this.install_prefix.empty) {
this.install_prefix = absolutePath("./miniconda");
@@ -156,22 +156,19 @@ class Conda {
}
if (this.have_installer()) {
- writeln("Installer already exists");
+ writeln("Miniconda installation script already exists");
} else {
download(this.url_installer, this.installer_file());
}
- auto installer = executeShell(
+ auto installer = this.sh(
"bash "
~ this.installer_file()
~ " -b"
~ " -p "
- ~ this.install_prefix,
- env=this.env);
+ ~ this.install_prefix);
- writeln(installer.output);
-
- if (installer.status != 0) {
+ if (installer != 0) {
return false;
}
@@ -227,8 +224,8 @@ class Conda {
return proc;
}
- auto sh_block(string command) {
- auto proc = executeShell(command, env=this.env);
+ auto run_block(string command) {
+ auto proc = this.sh_block("conda " ~ command);
return proc;
}
@@ -238,6 +235,11 @@ class Conda {
return wait(proc);
}
+ auto sh_block(string command) {
+ auto proc = executeShell(command, env=this.env);
+ return proc;
+ }
+
string multiarg(string flag, string[] arr) {
return flag ~ " " ~ arr.join(" " ~ flag ~ " ");
}
@@ -257,4 +259,22 @@ class Conda {
}
return result;
}
+
+ string dump_env_yaml(string filename=null) {
+ string args;
+ if (filename !is null) {
+ args = "--file " ~ filename;
+ }
+ auto proc = this.run_block("env export " ~ args);
+ return proc.output;
+ }
+
+ string dump_env_explicit(string filename=null) {
+ auto proc = this.run_block("list --explicit");
+ if (filename !is null) {
+ auto file = File(filename, "w+");
+ file.write(proc.output);
+ }
+ return proc.output;
+ }
}
diff --git a/source/merge.d b/source/merge.d
index 4f3caea..e26ab73 100644
--- a/source/merge.d
+++ b/source/merge.d
@@ -44,9 +44,6 @@ string[string][] dmfile(string filename) {
if (line.empty) { continue; }
auto record = matchFirst(line, RE_DMFILE);
- writefln("-> package: %-10s :: version: %-10s", record["name"],
- !record["version"].empty ? record["version"] : "none");
-
pkg["name"] = record["name"].dup;
pkg["version"] = record["version"].dup;
pkg["fullspec"] = record.hit.dup;
@@ -65,26 +62,24 @@ bool env_combine(ref Conda conda, string name, string specfile, string mergefile
int retval = 0;
string[] specs;
- auto merge_data = dmfile(mergefile);
- foreach (record; merge_data) {
- specs ~= record["fullspec"];
- }
- retval = conda.run("create -n "
- ~ name
- ~ " --file "
- ~ specfile);
- if (retval) {
+ if(conda.run("create -n " ~ name ~ " --file " ~ specfile)) {
return false;
}
conda.activate(name);
- retval = conda.run("install "
- ~ conda.multiarg("-c", conda.channels)
- ~ " "
- ~ safe_install(specs));
- if (retval) {
+ writeln("Delivery merge specification:");
+ foreach (record; dmfile(mergefile)) {
+ writefln("-> package: %-15s :: version: %s",
+ record["name"],
+ !record["version"].empty ? record["version"] : "any");
+
+ specs ~= record["fullspec"];
+ }
+
+ if (conda.run("install " ~ conda.multiarg("-c", conda.channels)
+ ~ " " ~ safe_install(specs))) {
return false;
}
return true;
@@ -94,22 +89,33 @@ bool env_combine(ref Conda conda, string name, string specfile, string mergefile
string[string][] testable_packages(ref Conda conda, string mergefile) {
string[string][] results;
foreach (record; dmfile(mergefile)) {
+ Node meta;
+ string pkg_d;
+ string pkg;
+ string repository;
+ string head;
+ string[] logdata;
string[] found_packages = conda.scan_packages(record["name"]
~ "-"
~ record["version"]
~ "*");
- string pkg = found_packages[$-1];
- string pkg_d = chainPath(conda.install_prefix,
- "pkgs",
- pkg).array;
+
+ if (found_packages.empty) {
+ writefln("Unable to locate package: %s", record["fullspec"]);
+ continue;
+ } else if (found_packages.length > 1) {
+ pkg = found_packages[$-1];
+ } else {
+ pkg = found_packages[0];
+ }
+ pkg_d = chainPath(conda.install_prefix,
+ "pkgs",
+ pkg).array;
+
string info_d = chainPath(pkg_d, "info").array;
string recipe_d = chainPath(info_d, "recipe").array;
string git_log = chainPath(info_d, "git").array;
string recipe = chainPath(recipe_d, "meta.yaml").array;
- string repository;
- string head;
- string[] logdata;
- Node meta;
if (!git_log.exists) {
continue;
@@ -125,7 +131,12 @@ string[string][] testable_packages(ref Conda conda, string mergefile) {
head = logdata[1].split()[1];
meta = Loader.fromFile(recipe).load();
- repository = meta["source"]["git_url"].as!string;
+ try {
+ repository = meta["source"]["git_url"].as!string;
+ } catch (Exception e) {
+ writeln(e.msg);
+ repository = "";
+ }
results ~= ["repo": repository, "commit": head];
}