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FROM centos:6.9
# Declare build-time environment
# Miniconda
ARG MC_VERSION=4.5.4
ARG MC_PLATFORM=Linux
ARG MC_ARCH=x86_64
ARG MC_URL=https://repo.continuum.io/miniconda
# Conda root
ARG CONDA_VERSION=4.5.10
ARG CONDA_BUILD_VERSION
ARG CONDA_PACKAGES
# Declare environment
ENV OPT=/opt \
HOME=/home/developer
ENV PYTHONUNBUFFERED=1 \
MC_VERSION=${MC_VERSION} \
MC_PLATFORM=${MC_PLATFORM} \
MC_ARCH=${MC_ARCH} \
MC_URL=${MC_URL} \
MC_INSTALLER=Miniconda3-${MC_VERSION}-${MC_PLATFORM}-${MC_ARCH}.sh \
MC_PATH=${OPT}/conda \
CONDA_VERSION=${CONDA_VERSION} \
CONDA_BUILD_VERSION=${CONDA_BUILD_VERSION} \
CONDA_PACKAGES=${CONDA_PACKAGES}
# Toolchain
RUN yum update -y && yum install -y \
bzip2-devel \
curl \
gcc \
gcc-c++ \
gcc-gfortran \
git \
glibc-devel.i686 \
glibc-devel \
kernel-devel \
libX11-devel \
mesa-libGL \
mesa-libGLU \
ncurses-devel \
subversion \
sudo \
wget \
zlib-devel \
&& yum clean all
# Create 'developer' user
# Configure sudoers
RUN groupadd developer \
&& useradd -g developer -m -d $HOME -s /bin/bash developer \
&& echo "developer:developer" | chpasswd \
&& echo "developer ALL=(ALL) NOPASSWD: ALL" >> /etc/sudoers
# Install Miniconda
# Reset permissions
RUN curl -q -O ${MC_URL}/${MC_INSTALLER} \
&& bash ${MC_INSTALLER} -b -p ${MC_PATH} \
&& rm -rf ${MC_INSTALLER} \
&& echo export PATH="${MC_PATH}/bin:\${PATH}" > /etc/profile.d/conda.sh \
&& chown -R developer: ${OPT} ${HOME}
# Pipeline definition
ARG PIPELINE_URL
# Configure Conda
ENV PATH "${MC_PATH}/bin:${PATH}"
USER developer
RUN conda config --set auto_update_conda false \
&& conda config --set always_yes true \
&& conda config --set quiet true \
&& conda config --set rollback_enabled false \
&& conda install --yes --quiet \
conda=${CONDA_VERSION} \
conda-build=${CONDA_BUILD_VERSION} \
git \
${CONDA_PACKAGES} \
&& conda install --file "${PIPELINE_URL}"
WORKDIR ${HOME}
CMD ["/bin/bash"]
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