Refactor namespace

3 files changed, 0 insertions, 264 deletions

diff --git a/src/org/stsci/Conda.groovy b/src/org/stsci/Conda.groovy
deleted file mode 100644
index dc67052..0000000
--- a/src/org/stsci/Conda.groovy
+++ /dev/null
@@ -1,181 +0,0 @@
-package org.stsci
-
-class Conda implements Serializable {
-    public String prefix
-    public boolean prefix_exists
-    public Map<String, String> shell_environment
-    public String environment_name
-    public ArrayList channels
-    public boolean override
-
-    Conda (prefix) {
-        this.prefix = prefix
-        this.prefix_exists = new File(this.prefix).exists()
-        this.shell_environment = [:]
-        this.environment_name = ""
-        this.channels = []
-        this.override = false
-
-        if (this.prefix_exists) {
-            this.activate("root")
-        }
-    }
-
-    private def runshell(String args, silent=false) {
-        def cmd = new String[3]
-        def proc_env = [:]
-
-        if (this.shell_environment) {
-            proc_env = this.shell_environment
-        }
-
-        cmd[0] = 'bash'
-        cmd[1] = '-c'
-        cmd[2] = args
-
-        def process = new ProcessBuilder(cmd)
-        process.redirectErrorStream(true)
-        Map<String, String> env_tmp = process.environment()
-
-        if (proc_env) {
-            env_tmp <<= proc_env
-        }
-
-        Process p = process.start()
-        if (!silent) {
-            p.inputStream.eachLine { println it}
-        }
-        p.waitFor()
-        return p
-    }
-
-    void activate(String conda_env) {
-        def records = [:]
-        def env_dump = this.runshell("source ${prefix}/bin/activate ${conda_env} ; printenv", true)
-
-        /* Split each environment keypair by first occurance of '=' */
-        env_dump.inputStream.eachLine { line ->
-            if(line) {
-                def pair = line.split('=', 2).collect { it.trim() }
-                /* Strip out envmodules if they exist, i.e. multiline variables*/
-                if (pair[0].contains("_FUNC_") || !line.contains("=")) {
-                    return
-                }
-                records."${pair[0]}" = pair[1]
-            }
-        }
-
-        /* runshell can now natively resolve this conda installation */
-        this.shell_environment = records
-
-        /* record latest conda environment name */
-        this.environment_name = conda_env
-    }
-
-    def version() {
-        return this.runshell("conda --version")
-    }
-
-    def verify() {
-        this.runshell("echo \$PATH")
-        this.runshell("which python")
-        this.runshell("python -c 'from pprint import pprint; import sys; pprint(sys.path)'")
-    }
-
-    def command(String task, String... args) {
-        /* Not every Conda task accepts --quiet or --yes
-           so only apply $extra_args when necessary */
-        ArrayList silent_args = ["--quiet", "--yes"]
-        boolean use_channels = false
-        boolean prompt_avoid = false
-        ArrayList channels = this.channels
-
-        switch (task) {
-            case 'install':
-                use_channels = true
-                prompt_avoid = true
-                break
-            case 'create':
-                use_channels = true
-                prompt_avoid = true
-                break
-            case 'search':
-                use_channels = true
-            case 'env remove':
-                prompt_avoid = true
-                break
-            default:
-                break
-        }
-
-        String cmd = "${prefix}/bin/conda ${task}"
-        cmd += ' ' + args.join(' ')
-
-        if (prompt_avoid) {
-            cmd += ' ' + silent_args.join(' ')
-        }
-
-        if (use_channels) {
-            if (this.override) {
-                cmd += " --override-channels"
-                channels.add("defaults")
-            }
-            for (channel in channels) {
-                cmd += ' -c ' + channel
-            }
-        }
-
-        println("[CONDA] ${cmd}")
-        return this.runshell(cmd)
-    }
-
-    boolean provides(String env_name) {
-        def result = ""
-        def output = this.runshell("${this.prefix}/bin/conda env list", true)
-
-        output.inputStream.eachLine { line ->
-            if (line && !line.matches('^#.*$')) {
-                def tmp = line.split(' ')[0].trim()
-                if (tmp == env_name) {
-                    result = tmp
-                    return
-                }
-            }
-        }
-        if (env_name == result) {
-            return true
-        }
-        return false
-    }
-
-    int create(String name, String packages) {
-        String args = "-n \"${name}\""
-        def proc = this.command("create", args, packages)
-        return proc.exitcode
-    }
-
-    int install(String packages, boolean reinstall=false) {
-        String args = ""
-        if (reinstall) {
-            args = "--force"
-        }
-        def proc = this.command("install", args, packages)
-        return proc.exitcode
-    }
-
-    int remove(String packages, boolean force=false) {
-        String args = ""
-        if (force) {
-            args = "--force"
-        }
-        def proc = this.command("remove", args, packages)
-        return proc.exitcode
-    }
-
-    int destroy(String name) {
-        String args = "-n \"${name}\""
-        def proc = this.command("env remove", args)
-        return proc.exitcode
-    }
-}
-
diff --git a/src/org/stsci/CondaInstaller.groovy b/src/org/stsci/CondaInstaller.groovy
deleted file mode 100644
index 50f7f50..0000000
--- a/src/org/stsci/CondaInstaller.groovy
+++ /dev/null
@@ -1,64 +0,0 @@
-package org.stsci
-import org.stsci.OSInfo
-
-class CondaInstaller implements Serializable {
-    OSInfo os
-    String prefix
-    String dist_version
-    String url
-    def dist = [:]
-
-    CondaInstaller(prefix, dist="miniconda", variant="3", version="latest") {
-        def distributions = [
-            miniconda: [name: 'Miniconda',
-                        variant: variant,
-                        baseurl: 'https://repo.continuum.io/miniconda'],
-            anaconda: [name: 'Anaconda',
-                       variant: variant,
-                       baseurl: 'https://repo.continuum.io/archive']
-        ]
-        this.os = new OSInfo()
-        this.dist = distributions."${dist}"
-        this.dist_version = version
-        this.prefix = prefix
-        this.url = "${this.dist.baseurl}/" +
-                  "${this.dist.name}${this.dist.variant}-" +
-                  "${this.dist_version}-${this.os.name}-${this.os.arch}.sh"
-    }
-
-    void download() {
-
-        println("Downloading $url")
-        File fp = new File('installer.sh')
-        def installer = fp.newOutputStream()
-        installer << new URL(this.url).openStream()
-        installer.close()
-        println("Received ${fp.length()} bytes")
-    }
-
-    int install() {
-        if (new File(this.prefix).exists()) {
-            println("Skipping installation: ${this.prefix} exists.")
-            return 0xFF
-        }
-
-        if (!new File('installer.sh').exists()) {
-            this.download()
-        }
-
-        def cmd = "bash installer.sh -b -p ${this.prefix}"
-        def proc = cmd.execute()
-        def stdout = new StringBuffer()
-
-        proc.inputStream.eachLine { println(it) }
-
-        //proc.waitForProcessOutput(stdout, System.err)
-        //print(stdout.toString())
-
-        return proc.exitValue()
-    }
-
-    private void detect() {
-    }
-}
-
diff --git a/src/org/stsci/OSInfo.groovy b/src/org/stsci/OSInfo.groovy
deleted file mode 100644
index 04375f8..0000000
--- a/src/org/stsci/OSInfo.groovy
+++ /dev/null
@@ -1,19 +0,0 @@
-package org.stsci
-
-class OSInfo implements Serializable {
-    public String name
-    public String version
-    public String arch
-
-    OSInfo () {
-        name = 'uname -s'.execute().text.trim()
-        if (name == 'Darwin') { name = 'MacOSX' }
-        arch = 'uname -m'.execute().text.trim()
-        if (arch.matches('^i.*86$')) { arch = 'x86' }
-
-        this.name = name
-        this.arch = arch
-        this.version = 'uname -r'.execute().text.trim()
-    }
-
-}