Refactor directory structure

* Move core library sources into src/lib/core
* Move command-line programs into src/cli

41 files changed, 70 insertions, 54 deletions

diff --git a/src/CMakeLists.txt b/src/CMakeLists.txt
index 5c5bc6e..bfee276 100644
--- a/src/CMakeLists.txt
+++ b/src/CMakeLists.txt
@@ -2,49 +2,6 @@ include_directories(${CMAKE_BINARY_DIR}/include)
 include_directories(${CMAKE_SOURCE_DIR}/include)
 include_directories(${PROJECT_BINARY_DIR})
 
-add_library(stasis_core STATIC
-        globals.c
-        str.c
-        strlist.c
-        ini.c
-        conda.c
-        environment.c
-        utils.c
-        system.c
-        download.c
-        delivery_postprocess.c
-        delivery_conda.c
-        delivery_docker.c
-        delivery_install.c
-        delivery_artifactory.c
-        delivery_test.c
-        delivery_build.c
-        delivery_show.c
-        delivery_populate.c
-        delivery_init.c
-        delivery.c
-        recipe.c
-        relocation.c
-        wheel.c
-        copy.c
-        artifactory.c
-        template.c
-        rules.c
-        docker.c
-        junitxml.c
-        github.c
-        template_func_proto.c
-        envctl.c
-        multiprocessing.c
-)
+add_subdirectory(lib)
+add_subdirectory(cli)
 
-add_executable(stasis
-        stasis_main.c
-)
-target_link_libraries(stasis PRIVATE stasis_core)
-target_link_libraries(stasis PUBLIC LibXml2::LibXml2)
-add_executable(stasis_indexer
-        stasis_indexer.c
-)
-target_link_libraries(stasis_indexer PRIVATE stasis_core)
-install(TARGETS stasis stasis_indexer RUNTIME)
diff --git a/src/cli/CMakeLists.txt b/src/cli/CMakeLists.txt
new file mode 100644
index 0000000..92a21b7
--- /dev/null
+++ b/src/cli/CMakeLists.txt
@@ -0,0 +1,2 @@
+add_subdirectory(stasis)
+add_subdirectory(stasis_indexer)
\ No newline at end of file
diff --git a/src/cli/stasis/CMakeLists.txt b/src/cli/stasis/CMakeLists.txt
new file mode 100644
index 0000000..3766f6d
--- /dev/null
+++ b/src/cli/stasis/CMakeLists.txt
@@ -0,0 +1,7 @@
+add_executable(stasis
+        stasis_main.c
+)
+target_link_libraries(stasis PRIVATE stasis_core)
+target_link_libraries(stasis PUBLIC LibXml2::LibXml2)
+
+install(TARGETS stasis RUNTIME)
diff --git a/src/stasis_main.c b/src/cli/stasis/stasis_main.c
index eecc419..75482c5 100644
--- a/src/stasis_main.c
+++ b/src/cli/stasis/stasis_main.c
@@ -4,6 +4,9 @@
 #include <limits.h>
 #include <getopt.h>
 #include "core.h"
+#include "envctl.h"
+#include "delivery.h"
+#include "template_func_proto.h"
 
 #define OPT_ALWAYS_UPDATE_BASE 1000
 #define OPT_NO_DOCKER 1001
diff --git a/src/cli/stasis_indexer/CMakeLists.txt b/src/cli/stasis_indexer/CMakeLists.txt
new file mode 100644
index 0000000..eae1394
--- /dev/null
+++ b/src/cli/stasis_indexer/CMakeLists.txt
@@ -0,0 +1,6 @@
+add_executable(stasis_indexer
+        stasis_indexer.c
+)
+target_link_libraries(stasis_indexer PRIVATE stasis_core)
+
+install(TARGETS stasis_indexer RUNTIME)
diff --git a/src/stasis_indexer.c b/src/cli/stasis_indexer/stasis_indexer.c
index 05b9e39..bd59920 100644
--- a/src/stasis_indexer.c
+++ b/src/cli/stasis_indexer/stasis_indexer.c
@@ -1,6 +1,7 @@
 #include <getopt.h>
 #include <fnmatch.h>
-#include "core.h"
+#include "delivery.h"
+#include "junitxml.h"
 
 static struct option long_options[] = {
         {"help", no_argument, 0, 'h'},
diff --git a/src/lib/CMakeLists.txt b/src/lib/CMakeLists.txt
new file mode 100644
index 0000000..82bfe4a
--- /dev/null
+++ b/src/lib/CMakeLists.txt
@@ -0,0 +1 @@
+add_subdirectory(core)
\ No newline at end of file
diff --git a/src/lib/core/CMakeLists.txt b/src/lib/core/CMakeLists.txt
new file mode 100644
index 0000000..c569187
--- /dev/null
+++ b/src/lib/core/CMakeLists.txt
@@ -0,0 +1,38 @@
+include_directories(${PROJECT_BINARY_DIR})
+
+add_library(stasis_core STATIC
+        globals.c
+        str.c
+        strlist.c
+        ini.c
+        conda.c
+        environment.c
+        utils.c
+        system.c
+        download.c
+        delivery_postprocess.c
+        delivery_conda.c
+        delivery_docker.c
+        delivery_install.c
+        delivery_artifactory.c
+        delivery_test.c
+        delivery_build.c
+        delivery_show.c
+        delivery_populate.c
+        delivery_init.c
+        delivery.c
+        recipe.c
+        relocation.c
+        wheel.c
+        copy.c
+        artifactory.c
+        template.c
+        rules.c
+        docker.c
+        junitxml.c
+        github.c
+        template_func_proto.c
+        envctl.c
+        multiprocessing.c
+)
+
diff --git a/src/artifactory.c b/src/lib/core/artifactory.c
index 6c4079a..6b9635d 100644
--- a/src/artifactory.c
+++ b/src/lib/core/artifactory.c
@@ -1,4 +1,4 @@
-#include "core.h"
+#include "artifactory.h"
 
 extern struct STASIS_GLOBAL globals;
 
diff --git a/src/conda.c b/src/lib/core/conda.c
index e60abc7..35caf02 100644
--- a/src/conda.c
+++ b/src/lib/core/conda.c
@@ -2,7 +2,6 @@
 // Created by jhunk on 5/14/23.
 //
 
-#include <unistd.h>
 #include "conda.h"
 
 int micromamba(struct MicromambaInfo *info, char *command, ...) {
diff --git a/src/copy.c b/src/lib/core/copy.c
index f69a756..f69a756 100644
--- a/src/copy.c
+++ b/src/lib/core/copy.c
diff --git a/src/delivery.c b/src/lib/core/delivery.c
index 07e04c8..e32ed4c 100644
--- a/src/delivery.c
+++ b/src/lib/core/delivery.c
@@ -1,4 +1,4 @@
-#include "core.h"
+#include "delivery.h"
 
 void delivery_free(struct Delivery *ctx) {
     guard_free(ctx->system.arch);
diff --git a/src/delivery_artifactory.c b/src/lib/core/delivery_artifactory.c
index 27f4823..27f4823 100644
--- a/src/delivery_artifactory.c
+++ b/src/lib/core/delivery_artifactory.c
diff --git a/src/delivery_build.c b/src/lib/core/delivery_build.c
index 3777a4c..b4d610a 100644
--- a/src/delivery_build.c
+++ b/src/lib/core/delivery_build.c
@@ -1,4 +1,3 @@
-#include <fnmatch.h>
 #include "delivery.h"
 
 int delivery_build_recipes(struct Delivery *ctx) {
diff --git a/src/delivery_conda.c b/src/lib/core/delivery_conda.c
index 93a06fc..93a06fc 100644
--- a/src/delivery_conda.c
+++ b/src/lib/core/delivery_conda.c
diff --git a/src/delivery_docker.c b/src/lib/core/delivery_docker.c
index e1d7f60..e1d7f60 100644
--- a/src/delivery_docker.c
+++ b/src/lib/core/delivery_docker.c
diff --git a/src/delivery_init.c b/src/lib/core/delivery_init.c
index e914f99..e914f99 100644
--- a/src/delivery_init.c
+++ b/src/lib/core/delivery_init.c
diff --git a/src/delivery_install.c b/src/lib/core/delivery_install.c
index 76c3f4a..76c3f4a 100644
--- a/src/delivery_install.c
+++ b/src/lib/core/delivery_install.c
diff --git a/src/delivery_populate.c b/src/lib/core/delivery_populate.c
index b37f677..b37f677 100644
--- a/src/delivery_populate.c
+++ b/src/lib/core/delivery_populate.c
diff --git a/src/delivery_postprocess.c b/src/lib/core/delivery_postprocess.c
index 1a902e3..1a902e3 100644
--- a/src/delivery_postprocess.c
+++ b/src/lib/core/delivery_postprocess.c
diff --git a/src/delivery_show.c b/src/lib/core/delivery_show.c
index adfa1be..adfa1be 100644
--- a/src/delivery_show.c
+++ b/src/lib/core/delivery_show.c
diff --git a/src/delivery_test.c b/src/lib/core/delivery_test.c
index cb78f64..cb78f64 100644
--- a/src/delivery_test.c
+++ b/src/lib/core/delivery_test.c
diff --git a/src/docker.c b/src/lib/core/docker.c
index 2d5e2cc..5834ef9 100644
--- a/src/docker.c
+++ b/src/lib/core/docker.c
@@ -1,4 +1,3 @@
-#include "core.h"
 #include "docker.h"
 
 
diff --git a/src/download.c b/src/lib/core/download.c
index f83adda..bfb323e 100644
--- a/src/download.c
+++ b/src/lib/core/download.c
@@ -2,8 +2,6 @@
 // Created by jhunk on 10/5/23.
 //
 
-#include <string.h>
-#include <stdlib.h>
 #include "download.h"
 
 size_t download_writer(void *fp, size_t size, size_t nmemb, void *stream) {
diff --git a/src/envctl.c b/src/lib/core/envctl.c
index 78dd760..9037d9d 100644
--- a/src/envctl.c
+++ b/src/lib/core/envctl.c
@@ -1,5 +1,4 @@
 #include "envctl.h"
-#include "core.h"
 
 struct EnvCtl *envctl_init() {
     struct EnvCtl *result;
diff --git a/src/environment.c b/src/lib/core/environment.c
index 580062c..580062c 100644
--- a/src/environment.c
+++ b/src/lib/core/environment.c
diff --git a/src/github.c b/src/lib/core/github.c
index 36e2e7c..c5e4534 100644
--- a/src/github.c
+++ b/src/lib/core/github.c
@@ -2,6 +2,7 @@
 #include <stdlib.h>
 #include <string.h>
 #include "core.h"
+#include "github.h"
 
 struct GHContent {
     char *data;
diff --git a/src/globals.c b/src/lib/core/globals.c
index 1b682cb..83465f1 100644
--- a/src/globals.c
+++ b/src/lib/core/globals.c
@@ -1,6 +1,7 @@
 #include <stdlib.h>
 #include <stdbool.h>
 #include "core.h"
+#include "envctl.h"
 
 const char *VERSION = "1.0.0";
 const char *AUTHOR = "Joseph Hunkeler";
diff --git a/src/ini.c b/src/lib/core/ini.c
index d44e1cc..d44e1cc 100644
--- a/src/ini.c
+++ b/src/lib/core/ini.c
diff --git a/src/junitxml.c b/src/lib/core/junitxml.c
index c7d0834..c7d0834 100644
--- a/src/junitxml.c
+++ b/src/lib/core/junitxml.c
diff --git a/src/multiprocessing.c b/src/lib/core/multiprocessing.c
index 2a1b350..484c566 100644
--- a/src/multiprocessing.c
+++ b/src/lib/core/multiprocessing.c
@@ -1,4 +1,5 @@
 #include "core.h"
+#include "multiprocessing.h"
 
 /// The sum of all tasks started by mp_task()
 size_t mp_global_task_count = 0;
diff --git a/src/recipe.c b/src/lib/core/recipe.c
index 833908c..833908c 100644
--- a/src/recipe.c
+++ b/src/lib/core/recipe.c
diff --git a/src/relocation.c b/src/lib/core/relocation.c
index 852aca4..852aca4 100644
--- a/src/relocation.c
+++ b/src/lib/core/relocation.c
diff --git a/src/rules.c b/src/lib/core/rules.c
index e42ee07..e42ee07 100644
--- a/src/rules.c
+++ b/src/lib/core/rules.c
diff --git a/src/str.c b/src/lib/core/str.c
index 868a6c7..868a6c7 100644
--- a/src/str.c
+++ b/src/lib/core/str.c
diff --git a/src/strlist.c b/src/lib/core/strlist.c
index 7a045f1..f0bffa8 100644
--- a/src/strlist.c
+++ b/src/lib/core/strlist.c
@@ -2,6 +2,7 @@
  * String array convenience functions
  * @file strlist.c
  */
+#include "download.h"
 #include "strlist.h"
 #include "utils.h"
 
diff --git a/src/system.c b/src/lib/core/system.c
index 4e605ec..4e605ec 100644
--- a/src/system.c
+++ b/src/lib/core/system.c
diff --git a/src/template.c b/src/lib/core/template.c
index a412fa8..a412fa8 100644
--- a/src/template.c
+++ b/src/lib/core/template.c
diff --git a/src/template_func_proto.c b/src/lib/core/template_func_proto.c
index 9c325bb..3305b4d 100644
--- a/src/template_func_proto.c
+++ b/src/lib/core/template_func_proto.c
@@ -1,4 +1,6 @@
 #include "template_func_proto.h"
+#include "delivery.h"
+#include "github.h"
 
 int get_github_release_notes_tplfunc_entrypoint(void *frame, void *data_out) {
     int result;
diff --git a/src/utils.c b/src/lib/core/utils.c
index 6381cea..89950df 100644
--- a/src/utils.c
+++ b/src/lib/core/utils.c
@@ -1,5 +1,6 @@
 #include <stdarg.h>
 #include "core.h"
+#include "utils.h"
 
 char *dirstack[STASIS_DIRSTACK_MAX];
 const ssize_t dirstack_max = sizeof(dirstack) / sizeof(dirstack[0]);
diff --git a/src/wheel.c b/src/lib/core/wheel.c
index 4692d0a..4692d0a 100644
--- a/src/wheel.c
+++ b/src/lib/core/wheel.c