diff options
author | Nadia Dencheva <nadia.astropy@gmail.com> | 2016-08-07 12:23:24 -0400 |
---|---|---|
committer | GitHub <noreply@github.com> | 2016-08-07 12:23:24 -0400 |
commit | a2e16e39b0eb8ac0251a6473c60fee0d437c3a5f (patch) | |
tree | 7b6771e9c1974852eb8a283507677651078ce32a /lib/stwcs/gui | |
parent | 86d1bc5a77491770d45b86e5cf18b79ded68fb9b (diff) | |
parent | 2dc0676bc00f66a87737e78484876051633b731a (diff) | |
download | stwcs_hcf-a2e16e39b0eb8ac0251a6473c60fee0d437c3a5f.tar.gz |
Merge pull request #9 from nden/refactor-and-tests
restructure and add stwcs tests
Diffstat (limited to 'lib/stwcs/gui')
30 files changed, 0 insertions, 808 deletions
diff --git a/lib/stwcs/gui/__init__.py b/lib/stwcs/gui/__init__.py deleted file mode 100644 index cd21bf6..0000000 --- a/lib/stwcs/gui/__init__.py +++ /dev/null @@ -1,19 +0,0 @@ -""" STWCS.GUI - -This package defines the TEAL interfaces for public, file-based operations -provided by the STWCS package. - -""" -from __future__ import absolute_import # confidence high -__docformat__ = 'restructuredtext' - -# import modules which define the TEAL interfaces -from . import write_headerlet -from . import extract_headerlet -from . import attach_headerlet -from . import delete_headerlet -from . import headerlet_summary -from . import archive_headerlet -from . import restore_headerlet -from . import apply_headerlet -from . import updatewcs diff --git a/lib/stwcs/gui/apply_headerlet.help b/lib/stwcs/gui/apply_headerlet.help deleted file mode 100644 index f701b52..0000000 --- a/lib/stwcs/gui/apply_headerlet.help +++ /dev/null @@ -1,38 +0,0 @@ -This task applies a headerlet to a science observation to update either the -PRIMARY WCS or to add it as an alternate WCS. - -filename = "" -hdrlet = "" -attach = True -primary = True -archive = True -force = False -wcskey = "" -wcsname = "" -verbose = False - -Parameters ----------- -filename: string, @-file or wild-card name - File name(s) of science observation whose WCS solution will be updated -hdrlet: string, @-file or wild-card name - Headerlet file(s), must match input filenames 1-to-1 -attach: boolean - True (default): append headerlet to FITS file as a new extension. -primary: boolean - Specify whether or not to replace PRIMARY WCS with WCS from headerlet. -archive: boolean - True (default): before updating, create a headerlet with the - WCS old solution. -force: boolean - If True, this will cause the headerlet to replace the current PRIMARY - WCS even if it has a different distortion model. [Default: False] -wcskey: string - Key value (A-Z, except O) for this alternate WCS - If None, the next available key will be used -wcsname: string - Name to be assigned to this alternate WCS - WCSNAME is a required keyword in a Headerlet but this allows the - user to change it as desired. -logging: boolean - enable file logging diff --git a/lib/stwcs/gui/apply_headerlet.py b/lib/stwcs/gui/apply_headerlet.py deleted file mode 100644 index d517e9f..0000000 --- a/lib/stwcs/gui/apply_headerlet.py +++ /dev/null @@ -1,54 +0,0 @@ -import os -from stsci.tools import teal, parseinput - -import stwcs -from stwcs.wcsutil import headerlet - -__taskname__ = __name__.split('.')[-1] # needed for help string -__package__ = headerlet.__name__ -__version__ = stwcs.__version__ -# -#### Interfaces used by TEAL -# -def getHelpAsString(docstring=False): - """ - return useful help from a file in the script directory called __taskname__.help - """ - install_dir = os.path.dirname(__file__) - htmlfile = os.path.join(install_dir,'htmlhelp',__taskname__+'.html') - helpfile = os.path.join(install_dir,__taskname__+'.help') - if docstring or (not docstring and not os.path.exists(htmlfile)): - helpString = __taskname__+' Version '+__version__+'\n\n' - if os.path.exists(helpfile): - helpString += teal.getHelpFileAsString(__taskname__,__file__) - else: - helpString = 'file://'+htmlfile - - return helpString - -def run(configObj=None): - - # start by interpreting filename and hdrlet inputs - filename = parseinput.parseinput(configObj['filename'])[0] - hdrlet = parseinput.parseinput(configObj['hdrlet'])[0] - - if configObj['primary']: - # Call function with properly interpreted input parameters - # Syntax: apply_headerlet_as_primary(filename, hdrlet, attach=True, - # archive=True, force=False, verbose=False) - headerlet.apply_headerlet_as_primary(filename, - hdrlet,attach=configObj['attach'], - archive=configObj['archive'],force=configObj['force'], - logging=configObj['logging']) - else: - wcsname = configObj['wcsname'] - if wcsname in ['',' ','INDEF']: wcsname = None - wcskey = configObj['wcskey'] - if wcskey == '': wcskey = None - # Call function with properly interpreted input parameters - # apply_headerlet_as_alternate(filename, hdrlet, attach=True, - # wcskey=None, wcsname=None, verbose=False) - headerlet.apply_headerlet_as_alternate(filename, - hdrlet, attach=configObj['attach'], - wcsname=wcsname, wcskey=wcskey, - logging=configObj['logging']) diff --git a/lib/stwcs/gui/archive_headerlet.py b/lib/stwcs/gui/archive_headerlet.py deleted file mode 100644 index 7ad3d4d..0000000 --- a/lib/stwcs/gui/archive_headerlet.py +++ /dev/null @@ -1,69 +0,0 @@ -from __future__ import print_function -import os - -from astropy.io import fits -from stsci.tools import teal - -import stwcs -from stwcs.wcsutil import headerlet - -__taskname__ = __name__.split('.')[-1] # needed for help string -__package__ = headerlet.__name__ -__version__ = stwcs.__version__ -# -#### Interfaces used by TEAL -# -def getHelpAsString(docstring=False): - """ - return useful help from a file in the script directory called __taskname__.help - """ - install_dir = os.path.dirname(__file__) - htmlfile = os.path.join(install_dir,'htmlhelp',__taskname__+'.html') - helpfile = os.path.join(install_dir,__taskname__+'.help') - if docstring or (not docstring and not os.path.exists(htmlfile)): - helpString = __taskname__+' Version '+__version__+'\n\n' - if os.path.exists(helpfile): - helpString += teal.getHelpFileAsString(__taskname__,__file__) - else: - helpString += headerlet.archive_as_headerlet.__doc__ - - else: - helpString = 'file://'+htmlfile - - return helpString - -def run(configObj=None): - - if configObj['hdrname'] in ['',' ','INDEF']: - print('='*60) - print('ERROR:') - print(' No valid "hdrname" parameter value provided!') - print(' Please restart this task and provide a value for this parameter.') - print('='*60) - return - - str_kw = ['wcsname','destim','sipname','npolfile','d2imfile', - 'descrip','history','author'] - - # create dictionary of remaining parameters, deleting extraneous ones - # such as those above - cdict = configObj.dict() - # remove any rules defined for the TEAL interface - if "_RULES_" in cdict: del cdict['_RULES_'] - del cdict['_task_name_'] - del cdict['filename'] - del cdict['hdrname'] - - # Convert blank string input as None - for kw in str_kw: - if cdict[kw] == '': cdict[kw] = None - if cdict['wcskey'].lower() == 'primary': cdict['wcskey'] = ' ' - - # Call function with properly interpreted input parameters - # Syntax: archive_as_headerlet(filename, sciext='SCI', wcsname=None, wcskey=None, - # hdrname=None, destim=None, - # sipname=None, npolfile=None, d2imfile=None, - # author=None, descrip=None, history=None, - # hdrlet=None, clobber=False) - headerlet.archive_as_headerlet(configObj['filename'], configObj['hdrname'], - **cdict) diff --git a/lib/stwcs/gui/attach_headerlet.py b/lib/stwcs/gui/attach_headerlet.py deleted file mode 100644 index 873c549..0000000 --- a/lib/stwcs/gui/attach_headerlet.py +++ /dev/null @@ -1,36 +0,0 @@ -import os - -from stsci.tools import teal - -import stwcs -from stwcs.wcsutil import headerlet - -__taskname__ = __name__.split('.')[-1] # needed for help string -__package__ = headerlet.__name__ -__version__ = stwcs.__version__ -# -#### Interfaces used by TEAL -# -def getHelpAsString(docstring=False): - """ - return useful help from a file in the script directory called __taskname__.help - """ - install_dir = os.path.dirname(__file__) - htmlfile = os.path.join(install_dir,'htmlhelp',__taskname__+'.html') - helpfile = os.path.join(install_dir,__taskname__+'.help') - if docstring or (not docstring and not os.path.exists(htmlfile)): - helpString = __taskname__+' Version '+__version__+'\n\n' - if os.path.exists(helpfile): - helpString += teal.getHelpFileAsString(__taskname__,__file__) - else: - helpString += eval('.'.join([__package__,__taskname__,'__doc__'])) - else: - helpString = 'file://'+htmlfile - - return helpString - -def run(configObj=None): - - headerlet.attach_headerlet(configObj['filename'],configObj['hdrlet'], - configObj['logging']) - diff --git a/lib/stwcs/gui/delete_headerlet.py b/lib/stwcs/gui/delete_headerlet.py deleted file mode 100644 index b3df5a7..0000000 --- a/lib/stwcs/gui/delete_headerlet.py +++ /dev/null @@ -1,52 +0,0 @@ -from __future__ import print_function -import os - -from stsci.tools import teal -from stsci.tools import parseinput - -import stwcs -from stwcs.wcsutil import headerlet - -__taskname__ = __name__.split('.')[-1] # needed for help string -__package__ = headerlet.__name__ -__version__ = stwcs.__version__ -# -#### Interfaces used by TEAL -# -def getHelpAsString(docstring=False): - """ - return useful help from a file in the script directory called __taskname__.help - """ - install_dir = os.path.dirname(__file__) - htmlfile = os.path.join(install_dir,'htmlhelp',__taskname__+'.html') - helpfile = os.path.join(install_dir,__taskname__+'.help') - if docstring or (not docstring and not os.path.exists(htmlfile)): - helpString = __taskname__+' Version '+__version__+'\n\n' - if os.path.exists(helpfile): - helpString += teal.getHelpFileAsString(__taskname__,__file__) - else: - helpString += eval('.'.join([__package__,__taskname__,'__doc__'])) - else: - helpString = 'file://'+htmlfile - - return helpString - -def run(configObj=None): - - if configObj['hdrname'] == '' and configObj['hdrext'] is None and \ - configObj['distname'] == '': - print('='*60) - print('ERROR:') - print(' No valid "hdrname", "hdrext" or "distname" parameter value provided!') - print(' Please restart this task and provide a value for one of these parameters.') - print('='*60) - return - filename = parseinput.parseinput(configObj['filename'])[0] - # Call function with properly interpreted input parameters - # Syntax: delete_headerlet(filename, hdrname=None, hdrext=None, distname=None) - headerlet.delete_headerlet(filename, - hdrname = configObj['hdrname'], - hdrext = configObj['hdrext'], - distname = configObj['distname'], - logging = configObj['logging']) - diff --git a/lib/stwcs/gui/extract_headerlet.py b/lib/stwcs/gui/extract_headerlet.py deleted file mode 100644 index 02ecd7a..0000000 --- a/lib/stwcs/gui/extract_headerlet.py +++ /dev/null @@ -1,58 +0,0 @@ -from __future__ import print_function -import os - -from stsci.tools import teal - -import stwcs -from stwcs.wcsutil import headerlet - -__taskname__ = __name__.split('.')[-1] # needed for help string -__package__ = headerlet.__name__ -__version__ = stwcs.__version__ -# -#### Interfaces used by TEAL -# -def getHelpAsString(docstring=False): - """ - return useful help from a file in the script directory called __taskname__.help - """ - install_dir = os.path.dirname(__file__) - htmlfile = os.path.join(install_dir,'htmlhelp',__taskname__+'.html') - helpfile = os.path.join(install_dir,__taskname__+'.help') - if docstring or (not docstring and not os.path.exists(htmlfile)): - helpString = __taskname__+' Version '+__version__+'\n\n' - if os.path.exists(helpfile): - helpString += teal.getHelpFileAsString(__taskname__,__file__) - else: - helpString += eval('.'.join([__package__,__taskname__,'__doc__'])) - - else: - helpString = 'file://'+htmlfile - - return helpString - -def run(configObj=None): - - if configObj['output'] in ['',' ',None]: - print('='*60) - print('ERROR:') - print(' No valid "output" parameter value provided!') - print(' Please restart this task and provide a value for this parameter.') - print('='*60) - return - - # create dictionary of remaining parameters, deleting extraneous ones - # such as those above - cdict = configObj.dict() - # remove any rules defined for the TEAL interface - if "_RULES_" in cdict: del cdict['_RULES_'] - del cdict['_task_name_'] - del cdict['filename'] - del cdict['output'] - - # Call function with properly interpreted input parameters - # Syntax: extract_headerlet(filename, output, extnum=None, hdrname=None, - # clobber=False, verbose=100) - headerlet.extract_headerlet(configObj['filename'], configObj['output'], - **cdict) - diff --git a/lib/stwcs/gui/headerlet_summary.py b/lib/stwcs/gui/headerlet_summary.py deleted file mode 100644 index 82a3e0c..0000000 --- a/lib/stwcs/gui/headerlet_summary.py +++ /dev/null @@ -1,47 +0,0 @@ -import os -from stsci.tools import teal - -import stwcs -from stwcs.wcsutil import headerlet - -__taskname__ = __name__.split('.')[-1] # needed for help string -__package__ = headerlet.__name__ -__version__ = stwcs.__version__ -# -#### Interfaces used by TEAL -# -def getHelpAsString(docstring=False): - """ - return useful help from a file in the script directory called __taskname__.help - """ - install_dir = os.path.dirname(__file__) - htmlfile = os.path.join(install_dir,'htmlhelp',__taskname__+'.html') - helpfile = os.path.join(install_dir,__taskname__+'.help') - if docstring or (not docstring and not os.path.exists(htmlfile)): - helpString = __taskname__+' Version '+__version__+'\n\n' - if os.path.exists(helpfile): - helpString += teal.getHelpFileAsString(__taskname__,__file__) - else: - helpString += eval('.'.join([__package__,__taskname__,'__doc__'])) - else: - helpString = 'file://'+htmlfile - - return helpString - -def run(configObj=None): - - # create dictionary of remaining parameters, deleting extraneous ones - # such as those above - cdict = configObj.dict() - # remove any rules defined for the TEAL interface - if "_RULES_" in cdict: del cdict['_RULES_'] - del cdict['_task_name_'] - del cdict['filename'] - if headerlet.is_par_blank(cdict['columns']): - cdict['columns'] = None - # Call function with properly interpreted input parameters - - # Syntax: headerlet_summary(filename,columns=None,pad=2,maxwidth=None, - # output=None,clobber=True,quiet=False) - headerlet.headerlet_summary(configObj['filename'],**cdict) - diff --git a/lib/stwcs/gui/pars/apply_headerlet.cfg b/lib/stwcs/gui/pars/apply_headerlet.cfg deleted file mode 100644 index 06d6daf..0000000 --- a/lib/stwcs/gui/pars/apply_headerlet.cfg +++ /dev/null @@ -1,10 +0,0 @@ -_task_name_ = apply_headerlet -filename = "" -hdrlet = "" -attach = True -primary = True -archive = True -force = False -wcskey = "" -wcsname = "" -logging = False diff --git a/lib/stwcs/gui/pars/apply_headerlet.cfgspc b/lib/stwcs/gui/pars/apply_headerlet.cfgspc deleted file mode 100644 index 648e562..0000000 --- a/lib/stwcs/gui/pars/apply_headerlet.cfgspc +++ /dev/null @@ -1,12 +0,0 @@ -_task_name_ = string_kw(default="apply_headerlet") -filename = string_kw(default="", comment="Input file name") -hdrlet = string_kw(default="", comment="Headerlet FITS filename") -attach = boolean_kw(default=True, comment= "Append headerlet to FITS file as new extension?") -primary = boolean_kw(default=True, triggers="_rule1_", comment="Replace PRIMARY WCS with headerlet WCS?") -archive = boolean_kw(default=True, active_if="_rule1_", comment="Save PRIMARY WCS as new headerlet extension?") -force = boolean_kw(default=False, active_if="_rule1_", comment="If distortions do not match, force update anyway?") -wcskey = option_kw("A","B","C","D","E","F","G","H","I","J","K","L","M","N","P","Q","R","S","T","U","V","W","X","Y","Z","", default="", inactive_if="_rule1_", comment="Apply headerlet as alternate WCS with this letter") -wcsname = string_kw(default="", inactive_if="_rule1_", comment="Apply headerlet as alternate WCS with this name") -logging = boolean_kw(default=False, comment= "Enable logging to a file") -[ _RULES_ ] -_rule1_ = string_kw(default=True, code='tyfn={"yes":True, "no":False}; OUT = tyfn[VAL]') diff --git a/lib/stwcs/gui/pars/archive_headerlet.cfg b/lib/stwcs/gui/pars/archive_headerlet.cfg deleted file mode 100644 index 97cd7ef..0000000 --- a/lib/stwcs/gui/pars/archive_headerlet.cfg +++ /dev/null @@ -1,14 +0,0 @@ -_task_name_ = archive_headerlet -filename = "" -hdrname = "" -sciext = "SCI" -wcsname = "" -wcskey = "PRIMARY" -destim = "" -sipname = "" -npolfile = "" -d2imfile = "" -author = "" -descrip = "" -history = "" -logging = False
\ No newline at end of file diff --git a/lib/stwcs/gui/pars/archive_headerlet.cfgspc b/lib/stwcs/gui/pars/archive_headerlet.cfgspc deleted file mode 100644 index 03e67f0..0000000 --- a/lib/stwcs/gui/pars/archive_headerlet.cfgspc +++ /dev/null @@ -1,14 +0,0 @@ -_task_name_ = string_kw(default="archive_headerlet") -filename = string_kw(default="", comment="Input file name") -hdrname = string_kw(default="", comment="Unique name(HDRNAME) for headerlet") -sciext = string_kw(default="SCI", comment="EXTNAME of extension with WCS") -wcsname = string_kw(default="", comment="Name of WCS to be archived") -wcskey = option_kw("A","B","C","D","E","F","G","H","I","J","K","L","M","N","P","Q","R","S","T","U","V","W","X","Y","Z","PRIMARY", default="PRIMARY", comment="Archive the WCS with this letter") -destim = string_kw(default="", comment="Rootname of image to which this headerlet applies ") -sipname = string_kw(default="", comment="Name for source of polynomial distortion keywords") -npolfile = string_kw(default="", comment="Name for source of non-polynomial residuals") -d2imfile = string_kw(default="", comment="Name for source of detector correction table") -author = string_kw(default="", comment="Author name for creator of headerlet") -descrip = string_kw(default="", comment="Short description of headerlet solution") -history = string_kw(default="", comment="Name of ASCII file containing history for headerlet") -logging = boolean_kw(default=False, comment= "Enable logging to a file")
\ No newline at end of file diff --git a/lib/stwcs/gui/pars/attach_headerlet.cfg b/lib/stwcs/gui/pars/attach_headerlet.cfg deleted file mode 100644 index d131a70..0000000 --- a/lib/stwcs/gui/pars/attach_headerlet.cfg +++ /dev/null @@ -1,4 +0,0 @@ -_task_name_ = attach_headerlet -filename = "" -hdrlet = "" -logging = False diff --git a/lib/stwcs/gui/pars/attach_headerlet.cfgspc b/lib/stwcs/gui/pars/attach_headerlet.cfgspc deleted file mode 100644 index bc91bca..0000000 --- a/lib/stwcs/gui/pars/attach_headerlet.cfgspc +++ /dev/null @@ -1,4 +0,0 @@ -_task_name_ = string_kw(default="attach_headerlet") -filename = string_kw(default="", comment="FITS image file name") -hdrlet = string_kw(default="", comment="Headerlet FITS filename") -logging = boolean_kw(default=False, comment= "Enable logging to a file")
\ No newline at end of file diff --git a/lib/stwcs/gui/pars/delete_headerlet.cfg b/lib/stwcs/gui/pars/delete_headerlet.cfg deleted file mode 100644 index d156937..0000000 --- a/lib/stwcs/gui/pars/delete_headerlet.cfg +++ /dev/null @@ -1,6 +0,0 @@ -_task_name_ = delete_headerlet -filename = "" -hdrname = "" -hdrext = None -distname = "" -logging = False
\ No newline at end of file diff --git a/lib/stwcs/gui/pars/delete_headerlet.cfgspc b/lib/stwcs/gui/pars/delete_headerlet.cfgspc deleted file mode 100644 index 43790b1..0000000 --- a/lib/stwcs/gui/pars/delete_headerlet.cfgspc +++ /dev/null @@ -1,6 +0,0 @@ -_task_name_ = string_kw(default="delete_headerlet") -filename = string_kw(default="", comment="FITS image file name(s), list or wild-card") -hdrname = string_kw(default="", comment="Delete headerlet with this HDRNAME") -hdrext = integer_or_none_kw(default=None, comment="Delete headerlet from this extension") -distname = string_kw(default="", comment="Delete *ALL* with this DISTNAME") -logging = boolean_kw(default=False, comment= "Enable logging to a file") diff --git a/lib/stwcs/gui/pars/extract_headerlet.cfg b/lib/stwcs/gui/pars/extract_headerlet.cfg deleted file mode 100644 index 3dd0a7a..0000000 --- a/lib/stwcs/gui/pars/extract_headerlet.cfg +++ /dev/null @@ -1,7 +0,0 @@ -_task_name_ = extract_headerlet -filename = "" -output = "" -extnum = None -hdrname = "" -clobber = True -logging = False diff --git a/lib/stwcs/gui/pars/extract_headerlet.cfgspc b/lib/stwcs/gui/pars/extract_headerlet.cfgspc deleted file mode 100644 index b50d4bf..0000000 --- a/lib/stwcs/gui/pars/extract_headerlet.cfgspc +++ /dev/null @@ -1,7 +0,0 @@ -_task_name_ = string_kw(default="extract_headerlet") -filename = string_kw(default="", comment="Input file name") -output = string_kw(default="", comment="Output headerlet FITS filename") -extnum = integer_or_none_kw(default=None, comment="FITS extension number of headerlet") -hdrname = string_kw(default="", comment="Unique name(HDRNAME) for headerlet") -clobber = boolean_kw(default=True, comment= "Overwrite existing headerlet FITS file?") -logging = boolean_kw(default=False, comment= "Enable logging to a file") diff --git a/lib/stwcs/gui/pars/headerlet_summary.cfg b/lib/stwcs/gui/pars/headerlet_summary.cfg deleted file mode 100644 index 7203552..0000000 --- a/lib/stwcs/gui/pars/headerlet_summary.cfg +++ /dev/null @@ -1,8 +0,0 @@ -_task_name_ = headerlet_summary -filename = "" -columns = None -pad = 2 -maxwidth = None -output = "" -clobber = True -quiet = False diff --git a/lib/stwcs/gui/pars/headerlet_summary.cfgspc b/lib/stwcs/gui/pars/headerlet_summary.cfgspc deleted file mode 100644 index ce65930..0000000 --- a/lib/stwcs/gui/pars/headerlet_summary.cfgspc +++ /dev/null @@ -1,8 +0,0 @@ -_task_name_ = string_kw(default="headerlet_summary") -filename = string_kw(default="", comment="FITS image file name") -columns = string_kw(default="", comment="Headerlet keyword(s) to be reported") -pad = integer_kw(default=2, comment="Number of spaces between output columns") -maxwidth = integer_or_none_kw(default=None, comment="Max width for each column") -output = string_kw(default="", comment="Name of output file for summary") -clobber = boolean_kw(default=True, comment="Overwrite previously written summary?") -quiet = boolean_kw(default=False, comment="Suppress output of summary to STDOUT?") diff --git a/lib/stwcs/gui/pars/restore_headerlet.cfg b/lib/stwcs/gui/pars/restore_headerlet.cfg deleted file mode 100644 index b0ec427..0000000 --- a/lib/stwcs/gui/pars/restore_headerlet.cfg +++ /dev/null @@ -1,10 +0,0 @@ -_task_name_ = restore_headerlet -filename = "" -archive = True -force = False -distname = "" -primary = None -sciext = "SCI" -hdrname = "" -hdrext = None -logging = False
\ No newline at end of file diff --git a/lib/stwcs/gui/pars/restore_headerlet.cfgspc b/lib/stwcs/gui/pars/restore_headerlet.cfgspc deleted file mode 100644 index df47e3f..0000000 --- a/lib/stwcs/gui/pars/restore_headerlet.cfgspc +++ /dev/null @@ -1,12 +0,0 @@ -_task_name_ = string_kw(default="restore_headerlet") -filename = string_kw(default="", comment="Input file name") -archive = boolean_kw(default=True, comment= "Create headerlets from WCSs being replaced?") -force = boolean_kw(default=False, comment="If distortions do not match, force update anyway?") -distname = string_kw(default="", triggers="_rule1_", comment="Restore ALL headerlet extensions with this DISTNAME") -primary = integer_or_none_kw(default=None, inactive_if="_rule1_", comment="Headerlet extension to restore as new primary WCS") -sciext = string_kw(default="SCI", inactive_if="_rule1_", comment="EXTNAME of extension with WCS") -hdrname = string_kw(default="", active_if="_rule1_", comment="HDRNAME of headerlet extension to be restored") -hdrext = integer_or_none_kw(default=None, active_if="_rule1_", comment="Extension number for headerlet to be restored") -logging = boolean_kw(default=False, comment= "Enable logging to a file") -[ _RULES_ ] -_rule1_ = string_kw(default=True, code='from stwcs import wcsutil;from stwcs.wcsutil import headerlet;OUT = headerlet.is_par_blank(VAL)') diff --git a/lib/stwcs/gui/pars/updatewcs.cfg b/lib/stwcs/gui/pars/updatewcs.cfg deleted file mode 100644 index 35360f2..0000000 --- a/lib/stwcs/gui/pars/updatewcs.cfg +++ /dev/null @@ -1,8 +0,0 @@ -_task_name_ = updatewcs -input = "*flt.fits" -extname = "SCI" -vacorr = True -tddcorr = True -npolcorr = True -d2imcorr = True -checkfiles = True diff --git a/lib/stwcs/gui/pars/updatewcs.cfgspc b/lib/stwcs/gui/pars/updatewcs.cfgspc deleted file mode 100644 index a3a3fb5..0000000 --- a/lib/stwcs/gui/pars/updatewcs.cfgspc +++ /dev/null @@ -1,8 +0,0 @@ -_task_name_ = string_kw(default="updatewcs") -input = string_kw(default="", comment="Input files (name, suffix, or @list)") -extname = string_kw(default="SCI", comment="EXTNAME of extensions to be archived") -vacorr = boolean_kw(default=True, comment= "Apply velocity aberration correction?") -tddcorr = boolean_kw(default=True, comment= "Apply time dependent distortion correction?") -npolcorr = boolean_kw(default=True, comment= "Apply lookup table distortion?") -d2imcorr = boolean_kw(default=True, comment= "Apply detector to image correction?") -checkfiles = boolean_kw(default=True, comment= "Check format of input files?") diff --git a/lib/stwcs/gui/pars/write_headerlet.cfg b/lib/stwcs/gui/pars/write_headerlet.cfg deleted file mode 100644 index 9eb4592..0000000 --- a/lib/stwcs/gui/pars/write_headerlet.cfg +++ /dev/null @@ -1,18 +0,0 @@ -_task_name_ = write_headerlet -filename = "" -output = "" -clobber = True -hdrname = "" -wcskey = "PRIMARY" -wcsname = "" -author = "" -descrip = "" -catalog = "" -history = "" -sciext = "SCI" -destim = "" -sipname = "" -npolfile = "" -d2imfile = "" -attach = True -logging = False
\ No newline at end of file diff --git a/lib/stwcs/gui/pars/write_headerlet.cfgspc b/lib/stwcs/gui/pars/write_headerlet.cfgspc deleted file mode 100644 index ba28b05..0000000 --- a/lib/stwcs/gui/pars/write_headerlet.cfgspc +++ /dev/null @@ -1,18 +0,0 @@ -_task_name_ = string_kw(default="write_headerlet") -filename = string_kw(default="", comment="Input file name") -output = string_kw(default="", comment="Filename for headerlet FITS file") -clobber = boolean_kw(default=True, comment= "Overwrite existing headerlet FITS file?") -hdrname = string_kw(default="", comment="Unique name(HDRNAME) for headerlet[REQUIRED]") -wcskey = option_kw("A","B","C","D","E","F","G","H","I","J","K","L","M","N","P","Q","R","S","T","U","V","W","X","Y","Z","PRIMARY", default="PRIMARY", comment="Create headerlet from WCS with this letter") -wcsname = string_kw(default="", comment="Create headerlet from WCS with this name") -author = string_kw(default="", comment="Author name for creator of headerlet") -descrip = string_kw(default="", comment="Short description of headerlet solution") -catalog = string_kw(default="", comment="Reference frame for headerlet solution") -history = string_kw(default="", comment="Name of ASCII file containing history for headerlet") -sciext = string_kw(default="SCI", comment="EXTNAME of extension with WCS") -destim = string_kw(default="", comment="Rootname of image to which this headerlet applies ") -sipname = string_kw(default="", comment="Name for source of polynomial distortion keywords") -npolfile = string_kw(default="", comment="Name for source of non-polynomial residuals") -d2imfile = string_kw(default="", comment="Name for source of detector correction table") -attach = boolean_kw(default=True, comment="Create headerlet FITS extension?") -logging = boolean_kw(default=False, comment= "Enable logging to a file")
\ No newline at end of file diff --git a/lib/stwcs/gui/restore_headerlet.help b/lib/stwcs/gui/restore_headerlet.help deleted file mode 100644 index fe07a15..0000000 --- a/lib/stwcs/gui/restore_headerlet.help +++ /dev/null @@ -1,43 +0,0 @@ -Restore headerlet extension(s) as either a primary WCS or as alternate WCSs - -This task can restore a WCS solution stored in a headerlet extension or -restore all WCS solutions from all headerlet extensions with the same -distortion model. - -Parameters ----------- -filename: string or HDUList - Either a filename or PyFITS HDUList object for the input science file - An input filename (str) will be expanded as necessary to interpret - any environmental variables included in the filename. - -archive: boolean (default True) - flag indicating if HeaderletHDUs should be created from the - primary and alternate WCSs in fname before restoring all matching - headerlet extensions - -force: boolean (default:False) - When the distortion models of the headerlet and the primary do - not match, and archive is False, this flag forces an update of - the primary. - -distname: string - distortion model as represented by a DISTNAME keyword - -primary: int or string or None - HeaderletHDU to be restored as primary - if int - a fits extension - if string - HDRNAME - if None - use first HeaderletHDU - -sciext: string (default: SCI) - EXTNAME value of FITS extensions with WCS keywords - -hdrname: string - HDRNAME keyword of HeaderletHDU - -hdrext: int or tuple - Headerlet extension number of tuple ('HDRLET',2) - -logging: boolean - enable file logging
\ No newline at end of file diff --git a/lib/stwcs/gui/restore_headerlet.py b/lib/stwcs/gui/restore_headerlet.py deleted file mode 100644 index 7570d76..0000000 --- a/lib/stwcs/gui/restore_headerlet.py +++ /dev/null @@ -1,48 +0,0 @@ -import os - -from stsci.tools import teal - -import stwcs -from stwcs.wcsutil import headerlet - -__taskname__ = __name__.split('.')[-1] # needed for help string -__package__ = headerlet.__name__ -__version__ = stwcs.__version__ -# -#### Interfaces used by TEAL -# -def getHelpAsString(docstring=False): - """ - return useful help from a file in the script directory called __taskname__.help - """ - install_dir = os.path.dirname(__file__) - htmlfile = os.path.join(install_dir,'htmlhelp',__taskname__+'.html') - helpfile = os.path.join(install_dir,__taskname__+'.help') - if docstring or (not docstring and not os.path.exists(htmlfile)): - helpString = __taskname__+' Version '+__version__+'\n\n' - if os.path.exists(helpfile): - helpString += teal.getHelpFileAsString(__taskname__,__file__) - else: - helpString = 'file://'+htmlfile - - return helpString - -def run(configObj=None): - - if configObj['distname'] not in ['',' ','INDEF']: - # Call function with properly interpreted input parameters - # Syntax: restore_all_with_distname(filename, distname, primary, - # archive=True, sciext='SCI', verbose=False) - headerlet.restore_all_with_distname(configObj['filename'], - configObj['distname'],configObj['primary'], - archive=configObj['archive'],sciext=configObj['sciext'], - logging=configObj['logging']) - else: - # Call function with properly interpreted input parameters - # restore_from_headerlet(filename, hdrname=None, hdrext=None, - # archive=True, force=False) - headerlet.restore_from_headerlet(configObj['filename'], - hdrname=configObj['hdrname'],hdrext=configObj['hdrext'], - archive=configObj['archive'], force=configObj['force'], - logging=configObj['logging']) - diff --git a/lib/stwcs/gui/updatewcs.py b/lib/stwcs/gui/updatewcs.py deleted file mode 100644 index 3dacb67..0000000 --- a/lib/stwcs/gui/updatewcs.py +++ /dev/null @@ -1,90 +0,0 @@ -from __future__ import print_function -import os - -from astropy.io import fits -from stsci.tools import parseinput -from stsci.tools import fileutil -from stsci.tools import teal -import stwcs -from stwcs import updatewcs -from stwcs.wcsutil import convertwcs - -allowed_corr_dict = {'vacorr':'VACorr','tddcorr':'TDDCorr','npolcorr':'NPOLCorr','d2imcorr':'DET2IMCorr'} - -__taskname__ = __name__.split('.')[-1] # needed for help string -__package__ = updatewcs.__name__ -__version__ = stwcs.__version__ - -# -#### Interfaces used by TEAL -# -def getHelpAsString(docstring=False): - """ - return useful help from a file in the script directory called __taskname__.help - """ - install_dir = os.path.dirname(__file__) - htmlfile = os.path.join(install_dir,'htmlhelp',__taskname__+'.html') - helpfile = os.path.join(install_dir,__taskname__+'.help') - if docstring or (not docstring and not os.path.exists(htmlfile)): - helpString = __taskname__+' Version '+__version__+'\n\n' - if os.path.exists(helpfile): - helpString += teal.getHelpFileAsString(__taskname__,__file__) - else: - helpString += eval('.'.join([__package__,__taskname__,'__doc__'])) - - else: - helpString = 'file://'+htmlfile - - return helpString - -def run(configObj=None): - - # Interpret primary parameters from configObj instance - extname = configObj['extname'] - input = configObj['input'] - - # create dictionary of remaining parameters, deleting extraneous ones - # such as those above - cdict = configObj.dict() - # remove any rules defined for the TEAL interface - if "_RULES_" in cdict: del cdict['_RULES_'] - del cdict['_task_name_'] - del cdict['input'] - del cdict['extname'] - - # parse input - input,altfiles = parseinput.parseinput(configObj['input']) - - # Insure that all input files have a correctly archived - # set of OPUS WCS keywords - # Legacy files from OTFR, like all WFPC2 data from OTFR, will only - # have the OPUS WCS keywords archived using a prefix of 'O' - # These keywords need to be converted to the Paper I alternate WCS - # standard using a wcskey (suffix) of 'O' - # If an alternate WCS with wcskey='O' already exists, this will copy - # the values from the old prefix-'O' WCS keywords to insure the correct - # OPUS keyword values get archived for use with updatewcs. - # - for file in input: - # Check to insure that there is a valid reference file to be used - idctab = fits.getval(file, 'idctab') - if not os.path.exists(fileutil.osfn(idctab)): - print('No valid distortion reference file ',idctab,' found in ',file,'!') - raise ValueError - - # Re-define 'cdict' to only have switches for steps supported by that instrument - # the set of supported steps are defined by the dictionary - # updatewcs.apply_corrections.allowed_corrections - # - for file in input: - # get instrument name from input file - instr = fits.getval(file,'INSTRUME') - # make copy of input parameters dict for this file - fdict = cdict.copy() - # Remove any parameter that is not part of this instrument's allowed corrections - for step in allowed_corr_dict: - if allowed_corr_dict[step] not in updatewcs.apply_corrections.allowed_corrections[instr]: - fdict[step] - # Call 'updatewcs' on correctly archived file - updatewcs.updatewcs(file,**fdict) - diff --git a/lib/stwcs/gui/write_headerlet.py b/lib/stwcs/gui/write_headerlet.py deleted file mode 100644 index e18bed8..0000000 --- a/lib/stwcs/gui/write_headerlet.py +++ /dev/null @@ -1,80 +0,0 @@ -from __future__ import print_function -import os - -from stsci.tools import teal -from stsci.tools import parseinput - -import stwcs -from stwcs.wcsutil import headerlet - -__taskname__ = __name__.split('.')[-1] # needed for help string -__package__ = headerlet.__name__ -__version__ = stwcs.__version__ -# -#### Interfaces used by TEAL -# -def getHelpAsString(docstring=False): - """ - return useful help from a file in the script directory called __taskname__.help - """ - install_dir = os.path.dirname(__file__) - htmlfile = os.path.join(install_dir,'htmlhelp',__taskname__+'.html') - helpfile = os.path.join(install_dir,__taskname__+'.help') - if docstring or (not docstring and not os.path.exists(htmlfile)): - helpString = __taskname__+' Version '+__version__+'\n\n' - if os.path.exists(helpfile): - helpString += teal.getHelpFileAsString(__taskname__,__file__) - else: - helpString += headerlet.write_headerlet.__doc__ - - else: - helpString = 'file://'+htmlfile - - return helpString - -def run(configObj=None): - flist,oname = parseinput.parseinput(configObj['filename']) - if len(flist) == 0: - print('='*60) - print('ERROR:') - print(' No valid "filename" parameter value provided!') - print(' Please check the working directory and restart this task.') - print('='*60) - return - - if configObj['hdrname'] in ['',' ','INDEF']: - print('='*60) - print('ERROR:') - print(' No valid "hdrname" parameter value provided!') - print(' Please restart this task and provide a value for this parameter.') - print('='*60) - return - - if configObj['output'] in ['',' ','INDEF']: - configObj['output'] = None - - str_kw = ['wcsname','destim','sipname','npolfile','d2imfile', - 'descrip','history','author','output','catalog'] - - # create dictionary of remaining parameters, deleting extraneous ones - # such as those above - cdict = configObj.dict() - # remove any rules defined for the TEAL interface - if "_RULES_" in cdict: del cdict['_RULES_'] - del cdict['_task_name_'] - del cdict['filename'] - del cdict['hdrname'] - - # Convert blank string input as None - for kw in str_kw: - if cdict[kw] == '': cdict[kw] = None - if cdict['wcskey'].lower() == 'primary': cdict['wcskey'] = ' ' - - # Call function with properly interpreted input parameters - # Syntax: write_headerlet(filename, hdrname, output, sciext='SCI', - # wcsname=None, wcskey=None, destim=None, - # sipname=None, npolfile=None, d2imfile=None, - # author=None, descrip=None, history=None, - # attach=True, clobber=False) - headerlet.write_headerlet(flist, configObj['hdrname'], - **cdict) |